PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G075400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 174aa    MW: 19769.4 Da    PI: 6.2838
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G075400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.82.1e-26756251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rien   rqvtfskRr g++KKAeEL vLCda+va+i+fs tgkl  ++s
  Sevir.4G075400.3.p  7 RIENAAARQVTFSKRRRGLFKKAEELAVLCDADVALIVFSATGKLSQFAS 56
                        8*********************************************9986 PP
2K-box52.71.8e-18871551785
               K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                          q +++ L++++ +  r +R++ Ge+Le Ls+ eL+q+e++Le +l ++ s+K++l++eqi+elq+k +
  Sevir.4G075400.3.p  87 EQSKYSGLNEQLAEASRGLRQMRGEELEGLSVDELHQMERKLEAGLHRVLSTKDQLFMEQINELQQKAE 155
                         5777888899999999**************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-32157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.268458IPR002100Transcription factor, MADS-box
CDDcd002655.26E-38472No hitNo description
SuperFamilySSF554557.19E-29472IPR002100Transcription factor, MADS-box
PfamPF003191.4E-25754IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-152035IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-153556IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.47184173IPR002487Transcription factor, K-box
PfamPF014861.4E-1588154IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAREIRRIEN AAARQVTFSK RRRGLFKKAE ELAVLCDADV ALIVFSATGK LSQFASSSMN  60
DIIDKYSTHS KNLGKSNQQP PIDLNVEQSK YSGLNEQLAE ASRGLRQMRG EELEGLSVDE  120
LHQMERKLEA GLHRVLSTKD QLFMEQINEL QQKAEFYGFK FEQILECWDS NLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17470773MEF2C
5f28_B1e-17470773MEF2C
5f28_C1e-17470773MEF2C
5f28_D1e-17470773MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G075400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4306351e-169AJ430635.1 Zea mays partial mRNA for putative MADS-domain transcription factor (m21 gene).
GenBankBT0415851e-169BT041585.1 Zea mays full-length cDNA clone ZM_BFb0012I22 mRNA, complete cds.
GenBankEU9642321e-169EU964232.1 Zea mays clone 277135 MADS-box transcription factor 22 mRNA, complete cds.
GenBankEU9672231e-169EU967223.1 Zea mays clone 300498 mRNA sequence.
GenBankKJ7269181e-169KJ726918.1 Zea mays clone pUT3463 MADS transcription factor (MADS74) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964865.11e-107MADS-box transcription factor 55
SwissprotQ9XJ661e-82MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A368QS861e-106A0A368QS86_SETIT; Uncharacterized protein
STRINGPavir.Da01333.1.p9e-97(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.19e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]