PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G037900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 1055aa MW: 116419 Da PI: 6.5956 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.7 | 1.9e-22 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + Sevir.4G037900.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIR 215 99*****************************96555444..8************************************************4 PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 +++ +l+++++ Sevir.4G037900.1.p 216 --DEKSQLLLGIRH 227 ..566667888876 PP | |||||||
2 | Auxin_resp | 122.9 | 2.3e-40 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldp+rW+nS+Wr+L+ Sevir.4G037900.1.p 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPIRWKNSHWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-44 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.13E-19 | 126 | 226 | No hit | No description |
SMART | SM01019 | 1.4E-22 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-20 | 127 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-35 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.4E-9 | 936 | 1025 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.747 | 939 | 1032 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.08E-8 | 955 | 1018 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1055 aa Download sequence Send to blast |
MKDPGSGGVT PSPAEGDKKP INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMHK 60 ELDTIPSYPS LPSKLICKLL SLTLHVHSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN 120 KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR 180 HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRHASR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITGIGD LDPIRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLGD DFALKDVQNA LFPGLSLVQW 420 MAMQQNPQML TAAAPAVQSQ YLTSNALGMQ DGIGGVNEDP AKRLSMQAQN VGLPNLQAGS 480 KVDHPAITSL AQQQQQQHPI LQQQQVQPLQ QNSAILQQQQ AQLLQQNAIH LQQQQEQLQR 540 QQSQPPQQLK ATASLQPMDQ HKLKEQQPSG GQAVSQAQLL NQILQPSSSQ IQQLGLPKSP 600 TQRPGLPGLT TMGSLPQPQL TQTPQLQQTA EYQQALLQSQ QPQLQQLSQS ELQLQLLQKI 660 QQQNLLSQLN PQHQSQLIQQ LSQKSQEILQ QQVLQHQLGG ADTMGQLKHL QQTPLNHMTG 720 SMTPQQLVRS HSALAESEEP SSSTAPSGSR VSPINSLSRA QQGSRNLPEI PSTPHIEHLL 780 QEIQSKSDNR IKNDIQGSKE TVHAPNRHPA SDQLDASSAT SFCLDESPRE GFSFPPVCLD 840 STAQVDPRDN FLIAENVDTL MPDALLSRGM SSGKGICNLP TGQRDHRDVE NELSSAAFSS 900 QSFGVPDMSF KPGCSSDVAV ADGGMASQGL WNSQTQRMRT FTKVQKRGSV GRSIDITRYR 960 GYEDLRHDLA CMFGIQGQLE DPYRTDWKLV YVDHENDILL VGDDPWEEFV SCVKSIKILS 1020 SAEVQQMSLD GDLGCIPPQG QACSASDDAN AWRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 16 | 356 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G037900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727741 | 0.0 | KJ727741.1 Zea mays clone pUT5682 ARF transcription factor (ARF27) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964586.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | K3XUZ6 | 0.0 | K3XUZ6_SETIT; Auxin response factor | ||||
STRING | Si005753m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G037900.1.p |
Publications ? help Back to Top | |||
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