PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G021400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 409aa MW: 43506.5 Da PI: 7.2514 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+ Sevir.4G021400.1.p 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 100 69****************************.9***************952444443456******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++++ + + +g++ktLvfykgrap+g+k+dW+mheyrl Sevir.4G021400.1.p 101 DKAIYT-SARRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 ******.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-56 | 7 | 149 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.696 | 11 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-28 | 12 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-56 | 179 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQEKC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYTSARR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD EAHNPSAAAA AAAAGDPYYS SPSPAAIRGA AGDQAAAQEQ 180 EGWVICRVFK KKNLLHHGQS SGGGATASVT GHTGAASSKM AAPMEGSPSN CSSVTVSDHA 240 KAQLLHSASD DALDHILQYI GGRPCGSNTK HHDTKPALLD HHHHHHLATT TTATACTGGG 300 LYGKFMKLPP LEHAGGLLQS PPGDYGGAAD ASGIADWDAL DRLAAYELNG LSDASKTMVS 360 FFDEPGSAAA AAFSSSVHAT TVGVGDGDLW SLARSVSSLH ADLTMDNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-46 | 8 | 193 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 8 | 193 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-46 | 8 | 193 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-46 | 8 | 193 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G021400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075080 | 0.0 | KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681409.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-107 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | K3XXA7 | 0.0 | K3XXA7_SETIT; Uncharacterized protein | ||||
STRING | Si006565m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 2e-86 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G021400.1.p |