PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G017500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 815aa    MW: 92011.4 Da    PI: 8.8954
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G017500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.11.2e-1753136190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+  +l+HnH+++
  Sevir.4G017500.1.p  53 RFYRKYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELANLDHNHPVS 136
                         5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1653137IPR004330FAR1 DNA binding domain
PfamPF105515.6E-28256349IPR018289MULE transposase domain
PROSITE profilePS509668.803543579IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-5548573IPR007527Zinc finger, SWIM-type
SMARTSM005759.0E-4554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MEVEEPFAQS KNPRRARRRD LNALDPSMEE SDGEDIGVPE VGMVFNNHAE VNRFYRKYAR  60
RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA KIRVKLWGDK  120
LLHVELANLD HNHPVSPAMA RFLNSYKQLS GPAKRRMRMG GPGAMPVEEP SKMPMDKLGE  180
LEELLFGESK HHSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCIRNVF  240
WADARSRAMY EYYSDVITLD TSYVVSKHDM PLATFIGVNH HGQSVLMGCA LLSDETAETY  300
SWLLKAWIAC MSGNLPKALV TDYCRGIQSA VTEVIPGVRH RMCLFQIMRK AAERLSGLSE  360
YRAINKAMHK AVYDSLTIDE FEGEWNALVT CNGLQGNDWL RSLYECRASW VPVFIKDTFW  420
AGMSVTQRNE TVTPFFDGYV DLKTTLKQFL GKYEMALQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK VYTHNMFKKF QDEIEAIMYC HVSLIGVDGP ISTFNVKECI FLEDGKRTMS  540
TIFAVTYNAD EKDITCICGG FQFSGILCRH SLSTLKFQLV REIPPQYIVD RWKKDFRQLH  600
VMGRPPSDLV PNNRVDRYDY LSMRCLQLVD SAVLSDKYRL ALRLVREMEK FLLNSNTHDD  660
TQPRIKSRVP KVNKPNTVTG QNVVDAATDK GNAGPKGPEP PAVMQASQIQ KGGAERGIVP  720
AGYIGVPANV QQFVANQAAI RPSIVYMVPS GVDPHAFGNG VLMPVMYQQM FQVPQKPNGT  780
VQDTSANGKK KRPRGQKLTE TSQLSNGTPG PSSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G017500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964403.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A368QQD30.0A0A368QQD3_SETIT; Uncharacterized protein
STRINGSi005823m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-137FAR1-related sequence 6