PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G016300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 270aa    MW: 29137.1 Da    PI: 6.7506
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G016300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-1880131155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++   grWv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  Sevir.4G016300.1.p  80 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 131
                         68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1380131IPR001471AP2/ERF domain
SMARTSM003801.7E-2581145IPR001471AP2/ERF domain
PROSITE profilePS5103222.31381139IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2081141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-3081141IPR001471AP2/ERF domain
PRINTSPR003671.5E-58293IPR001471AP2/ERF domain
PRINTSPR003671.5E-5105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPHQILYKRS HSPSKQQPHE HHHQDSRNHH SIRYMEYTDV GYDEQDQSPE AAAGGEYATV  60
MSAPPKRPAG RTKFRETRHP VYRGVRRRGP AGRWVCEVRE PNKKSRIWLG TFATAEAAAR  120
AHDVAALALR GRAACLNFAD SARLLRVDPA TLATPEDIRR AAIELAEASA HQDAAAAVAS  180
SSSSSSSAAV AAAAPMTAMM HQHQDAAPYD YAAMYGNMDF DNPYCYDGMG GGAVAGGNDW  240
TQTGWHTDGD DDGAGAAGCG SDMTLWSYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14791381271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G016300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858981e-149AY785898.1 Sorghum bicolor SbCBF5 (CBF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964394.10.0dehydration-responsive element-binding protein 1C
SwissprotA2Y8S61e-69DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
SwissprotQ9LWV31e-69DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBLA0A368QPQ50.0A0A368QPQ5_SETIT; Uncharacterized protein
STRINGSi007199m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.16e-33dehydration response element B1A
Publications ? help Back to Top
  1. Kim SJ, et al.
    Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.
    Mol. Cells, 2009. 27(4): p. 449-58
    [PMID:19390826]
  2. Kim MJ, et al.
    Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
    BMC Mol. Biol., 2009. 10: p. 91
    [PMID:19761621]
  3. Kim MJ, et al.
    Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Methods Mol. Biol., 2012. 786: p. 65-77
    [PMID:21938620]
  4. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  5. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]