PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G001100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 620aa MW: 67464.3 Da PI: 5.2692

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G001100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.8	7.9e-48	32	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrF+Ptdeelv++yLk+k++g+ ++ i++vd+ +ePw+Lp k +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd Sevir.4G001100.1.p 32 LPVGFRFRPTDEELVCHYLKPKIAGRVHPDLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKD 122 79***********************999888***********5346667888***************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + s+ g+l+g+kktLvf++grap+g++t+W+mheyr Sevir.4G001100.1.p 123 RLIRSRpAGTLIGIKKTLVFHRGRAPRGHRTSWIMHEYRT 162 *989999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-53	31	183	IPR003441	NAC domain
PROSITE profile	PS51005	54.543	32	183	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	33	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MAAAQAHAQA QRRGERKAMP SPPPPPPPPG ALPVGFRFRP TDEELVCHYL KPKIAGRVHP 60 DLLLIPDVDL SACEPWELPA KALIRSDDPE WFFFAPLDRK YPGGHRSNRS TAAGYWKATG 120 KDRLIRSRPA GTLIGIKKTL VFHRGRAPRG HRTSWIMHEY RTAEPQLQQG QNGSFVLYRL 180 FDKHEEEEPE AADAADSPST SSAADPPPIA PAVKAENLCQ PASAKMAHLL TTLSNNEPTA 240 AQEGDPLLDV LAQLPDLQPE QTYDGFPTIT SPMRPYTDHP FLGNVGGQDL SAYIDSIIAH 300 QDLEDLLVNP SLAKTVEHPT GNFEPIPTSL LVPSSSSSNN NRSPENSWAN LDTERLLLIQ 360 GADGTDAAAC CSSATKILQF DTGDANHDTG PQTDSASGVS AEASHLYNQY QLQSASIPQM 420 ELARSDMTDS DAFNGLEGSA PEPLMQQLSV SNFTDPHQGT ALRRIRLVHS IQRASVTEPV 480 LTSNSEGEDE ERSCYSTDNS STNNEDYANA GGAMHSQGGG VIPTQVVSST EVTGELQDFI 540 FDEGASSLHG VVRHGGNLKR RLKEEYMETN QDAGEILQHS IRVPREPSLR RRQRISSVVR 600 VLCLALVVIL VFVGLWKCI*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MAAAQAHAQA QRRGERKAMP SPPPPPPPPG ALPVGFRFRP TDEELVCHYL KPKIAGRVHP  60
DLLLIPDVDL SACEPWELPA KALIRSDDPE WFFFAPLDRK YPGGHRSNRS TAAGYWKATG  120
KDRLIRSRPA GTLIGIKKTL VFHRGRAPRG HRTSWIMHEY RTAEPQLQQG QNGSFVLYRL  180
FDKHEEEEPE AADAADSPST SSAADPPPIA PAVKAENLCQ PASAKMAHLL TTLSNNEPTA  240
AQEGDPLLDV LAQLPDLQPE QTYDGFPTIT SPMRPYTDHP FLGNVGGQDL SAYIDSIIAH  300
QDLEDLLVNP SLAKTVEHPT GNFEPIPTSL LVPSSSSSNN NRSPENSWAN LDTERLLLIQ  360
GADGTDAAAC CSSATKILQF DTGDANHDTG PQTDSASGVS AEASHLYNQY QLQSASIPQM  420
ELARSDMTDS DAFNGLEGSA PEPLMQQLSV SNFTDPHQGT ALRRIRLVHS IQRASVTEPV  480
LTSNSEGEDE ERSCYSTDNS STNNEDYANA GGAMHSQGGG VIPTQVVSST EVTGELQDFI  540
FDEGASSLHG VVRHGGNLKR RLKEEYMETN QDAGEILQHS IRVPREPSLR RRQRISSVVR  600
VLCLALVVIL VFVGLWKCI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-43	31	188	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-43	31	188	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-43	31	188	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-43	31	188	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	7e-43	31	188	19	173	NAC domain-containing protein 19
3swm_B	7e-43	31	188	19	173	NAC domain-containing protein 19
3swm_C	7e-43	31	188	19	173	NAC domain-containing protein 19
3swm_D	7e-43	31	188	19	173	NAC domain-containing protein 19
3swp_A	7e-43	31	188	19	173	NAC domain-containing protein 19
3swp_B	7e-43	31	188	19	173	NAC domain-containing protein 19
3swp_C	7e-43	31	188	19	173	NAC domain-containing protein 19
3swp_D	7e-43	31	188	19	173	NAC domain-containing protein 19
4dul_A	7e-43	31	188	16	170	NAC domain-containing protein 19
4dul_B	7e-43	31	188	16	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G001100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964251.1	0.0	uncharacterized protein LOC101755267 isoform X2
TrEMBL	A0A368QP71	0.0	A0A368QP71_SETIT; Uncharacterized protein
STRING	Si006105m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13413	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.2	6e-63	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Sevir.4G001100.1.p