PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G418100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 325aa MW: 36629 Da PI: 7.1876

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G418100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.9	7.1e-48	34	166	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrFhPtd+elv +yL++kve+k +++ ++ike+diyk++PwdLp+ + ++++k+ yfF+ r +ky+++ r+nr+t+sg+Wka Sevir.3G418100.1.p 34 FPGFRFHPTDQELVGFYLARKVEKKGFSI-DIIKEIDIYKHDPWDLPNearhgvvQGASGDKDRYFFCLRGRKYRNSIRPNRVTSSGFWKA 123 69*************************.99***********64677765444588899*********************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg dk+++ +ge glkk+Lv+y+g+a +g+ktdW+mhe+rl Sevir.3G418100.1.p 124 TGIDKPIHGGGGECLGLKKSLVYYRGSAGRGTKTDWMMHEFRL 166 *****9*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.672	33	194	IPR003441	NAC domain
SuperFamily	SSF101941	9.94E-52	33	194	IPR003441	NAC domain
Pfam	PF02365	1.9E-23	35	166	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MKPAMEEEKP LLERIKKTGG GAEEVENEED DLVFPGFRFH PTDQELVGFY LARKVEKKGF 60 SIDIIKEIDI YKHDPWDLPN EARHGVVQGA SGDKDRYFFC LRGRKYRNSI RPNRVTSSGF 120 WKATGIDKPI HGGGGECLGL KKSLVYYRGS AGRGTKTDWM MHEFRLPSTA ASAAAAAAEL 180 QDAEIWTICR IFKRNMSSYN RRCQQQQLKQ EHSSERSHQQ QQQQLQYYYD YHYLHQHRIS 240 VAMASSFDFD SSETKEAYGA TDHNQPFLLH GFHGVSSAIT TAAATSGLMM GAPSLPASTS 300 GWSELTTLRE SGSTWDELGR IMEI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	21	198	5	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	21	198	5	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	21	198	5	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	21	198	5	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	35	198	22	172	NAC domain-containing protein 19
3swm_B	1e-46	35	198	22	172	NAC domain-containing protein 19
3swm_C	1e-46	35	198	22	172	NAC domain-containing protein 19
3swm_D	1e-46	35	198	22	172	NAC domain-containing protein 19
3swp_A	1e-46	35	198	22	172	NAC domain-containing protein 19
3swp_B	1e-46	35	198	22	172	NAC domain-containing protein 19
3swp_C	1e-46	35	198	22	172	NAC domain-containing protein 19
3swp_D	1e-46	35	198	22	172	NAC domain-containing protein 19
4dul_A	1e-46	21	198	5	169	NAC domain-containing protein 19
4dul_B	1e-46	21	198	5	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G418100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003829	2e-47	AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBank	AP004314	2e-47	AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBank	AP014963	2e-47	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	2e-47	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660370.1	0.0	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	1e-75	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A368QQS9	0.0	A0A368QQS9_SETIT; Uncharacterized protein
STRING	Si022714m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-75	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Sevir.3G418100.1.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]