PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G402300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 309aa    MW: 33459.3 Da    PI: 8.8456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G402300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51131411128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhP+d+el+++yL +k+ gk  ++  +  + +vd++kvePwdLp++++ + +ewyfFs +d+kyatg+r+nrat sgyWkatgkd
  Sevir.3G402300.1.p  13 LPPGFRFHPRDDELICDYLGPKLGGKVgFSGRRPpMVDVDLNKVEPWDLPAAAAVGPREWYFFSLKDRKYATGQRTNRATVSGYWKATGKD 103
                         79***********************9986665656***************88888999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v + +g+lvg++ktLvfy+grapkg+kt+Wvmheyr+
  Sevir.3G402300.1.p 104 RAVAR-RGALVGMRKTLVFYQGRAPKGRKTEWVMHEYRM 141
                         ****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-584162IPR003441NAC domain
PROSITE profilePS5100555.15613162IPR003441NAC domain
PfamPF023652.0E-2614141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSISFLSMVE AELPPGFRFH PRDDELICDY LGPKLGGKVG FSGRRPPMVD VDLNKVEPWD  60
LPAAAAVGPR EWYFFSLKDR KYATGQRTNR ATVSGYWKAT GKDRAVARRG ALVGMRKTLV  120
FYQGRAPKGR KTEWVMHEYR MEGTLEQSSK DEDWVLCRVI CKKKLPGGAS SKASRSLATN  180
GGHDTAPTSS PPLPPLMDTT LAQLQAAMNT TAGAIEQVPC FSSFNNIASN SNSAAAAQPC  240
YLPMVTGSHG MSFLDHGLPE LGGCFDPLNC DKKLLKAVLS QFGGEVVPSL PHEMAAGTAA  300
TSTWMNHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-491016312169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G402300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963149.10.0NAC domain-containing protein 21/22
SwissprotQ84TE64e-77NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLK3Z8770.0K3Z877_SETIT; Uncharacterized protein
STRINGSi022747m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-74NAC family protein
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]