PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G396500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 376aa    MW: 42376.6 Da    PI: 10.721
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G396500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.6e-15182235457
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          k+ rr+ +NRe+ArrsR+RK++ +  Le  v  L++eN +L k+l  ++++++
  Sevir.3G396500.2.p 182 TKKMRRMLSNRESARRSRKRKQEHLTDLESQVSRLTSENASLLKRLADMTQKYK 235
                         5999***********************************999966666665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-16179243IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.565181233IPR004827Basic-leucine zipper domain
PfamPF001704.6E-13182235IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.41E-12183234No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-13183235No hitNo description
CDDcd147023.89E-16184234No hitNo description
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF124983.2E-26250355IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKTCFYLLGS QQMLSLPRLV QNENQNQRAF PEKSHGVATR PLAPQQRCRY KRGLPSGVHH  60
CSGCSQLPSF PLRPSPRYEV RERKRLSSEH GGRLRRRRRG GGELRRGRPR PRRLRGGAQE  120
EARPVLRRRR QIHDDGDGAD LVTNSNIIDY DDFRGKPANS GTSKEQSDDD GDLEENTDPT  180
NTKKMRRMLS NRESARRSRK RKQEHLTDLE SQVSRLTSEN ASLLKRLADM TQKYKDATLD  240
NRNLIVDVET MRRKVNIAEE AVRRLTGTTL LLPTTSDKPA SSMRLTSCAS DAASASVAIE  300
DSMEHFLRAP FQDSQTKLDL PNAEIPLASG EIGTKLAPMR RVASLENLQK RMHGDSLHSE  360
TASTFSSDPE SFAHR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18298RKRLSSEHGGRLRRRRR
297113RRGGGELRRGRPRPRRL
3195201RRSRKRK
4195202RRSRKRKQ
5197202SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G396500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660454.10.0bZIP transcription factor RISBZ2 isoform X1
TrEMBLA0A368QN270.0A0A368QN27_SETIT; Uncharacterized protein
STRINGSi022331m1e-168(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.19e-26basic leucine zipper 9