PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G389800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 364aa MW: 41772.3 Da PI: 7.9945 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.3 | 1.3e-18 | 38 | 126 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffk + +++g +++p kfa++++g+ s+ l+ +sg++W + + +k++++ +l +GW++Fvka++L+e+D ++F+ g+s+f Sevir.3G389800.1.p 38 FFKLM--TGDFSKG-ISIPDKFAKNFKGQ--ISRGFELKAPSGETWHMSV--EKRGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF- 120 56655..4445555.9*******999888..45558889***********..*******************************9999999. PP .EEEEE- CS B3 92 lvvkvfr 98 v vf+ Sevir.3G389800.1.p 121 -QVLVFE 126 .888776 PP | |||||||
2 | B3 | 46 | 9.8e-15 | 256 | 354 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f++vl++++v ++ + l++p +fa++h ++ + +++++ + ++W v + y+ + +++ +Fv++n+L+egD++vF+l++ + Sevir.3G389800.1.p 256 FVTVLMKKHVQRRnNALIIPSRFAADHLEE--RAHDIIFRRpNRKEKWLVSYYYSHYMRSF-RNLAFFKFVHDNKLREGDICVFELMKGkR 343 78999999999886889**********534..55589999945559******777777664.4567899****************997769 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +++++v+r+ Sevir.3G389800.1.p 344 RVTMTIHVIRN 354 99999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.65E-23 | 31 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.676 | 35 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-22 | 37 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.33E-19 | 37 | 125 | No hit | No description |
Pfam | PF02362 | 2.1E-16 | 38 | 126 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-13 | 38 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-18 | 248 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-15 | 249 | 353 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.89E-13 | 254 | 353 | No hit | No description |
Pfam | PF02362 | 1.0E-12 | 256 | 354 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-7 | 256 | 355 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.644 | 257 | 355 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MQQENGQASM VVEKGCESCR KWQEHYYWEH MDVTKIRFFK LMTGDFSKGI SIPDKFAKNF 60 KGQISRGFEL KAPSGETWHM SVEKRGDELF LMSGWEDFVK AHELQENDLL LFTCCGNSSF 120 QVLVFEASGC EKASSLFGSR ISPDMCKHVN DIAGQHGEQH FSVSDSEDTT TPSQHIGSYQ 180 NASSSKKSCG KTKPSESEYP NTSNFVAKHP AIGEEDSDDE YAKSNCYYSM FANRLRDDIK 240 EEIIGLASIQ LNNPAFVTVL MKKHVQRRNN ALIIPSRFAA DHLEERAHDI IFRRPNRKEK 300 WLVSYYYSHY MRSFRNLAFF KFVHDNKLRE GDICVFELMK GKRRVTMTIH VIRNANGRFI 360 LVG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G389800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963041.1 | 0.0 | B3 domain-containing protein Os12g0592300 | ||||
Swissprot | Q2QMT2 | 1e-129 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A368QMT0 | 0.0 | A0A368QMT0_SETIT; Uncharacterized protein | ||||
STRING | Si024423m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G389800.1.p |