PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G389700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 353aa    MW: 41047.6 Da    PI: 8.636
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G389700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-1730119199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffk +     +++g +++p kf+++++g+   +  + l+  sg++W v +  +k  ++ +lt+GW++Fvk  +L+e+D+++F+ +g+s+f 
  Sevir.3G389700.1.p  30 FFKLM--TGDFAKG-ISIPVKFVRNFNGQI--TEVVELKAASGETWHVGV--DKIADELLLTSGWEDFVKVRELQENDVLLFTCSGNSSF- 112
                         55555..4445555.9*******9998884..4579**************..*******************************9999999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v +f++
  Sevir.3G389700.1.p 113 -DVLIFEA 119
                         .8888865 PP
2B3391.4e-122553431099
                         HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                           +++ l++p +fa++h ++  ++++++l   ++  +W v++ y+ + ++   l+    +Fv++n+L+e D++vF+l++  ++ +++v+v+
  Sevir.3G389700.1.p 255 QRRNNFLTVPSRFAADHLHE--RPQEIILCRpRRKDRWFVRYYYTSYIRGfQNLQ--FFKFVHDNKLREEDTCVFELMKGaKRVTMTVHVI 341
                         3456889**********655..56678887746779******8865555534455..889****************99877*********9 PP

                         -S CS
                  B3  98 rk 99 
                         rk
  Sevir.3G389700.1.p 342 RK 343
                         97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-2123122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.1427120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-2129122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-1629117No hitNo description
SMARTSM010198.2E-1130120IPR003340B3 DNA binding domain
PfamPF023625.0E-1430118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17237343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-16238342IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-9243342No hitNo description
SMARTSM010191.2E-5245344IPR003340B3 DNA binding domain
PROSITE profilePS508639.488246344IPR003340B3 DNA binding domain
PfamPF023629.7E-11247343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMVAEKRCER CRKWQEHYYR EHMDVTKIRF FKLMTGDFAK GISIPVKFVR NFNGQITEVV  60
ELKAASGETW HVGVDKIADE LLLTSGWEDF VKVRELQEND VLLFTCSGNS SFDVLIFEAS  120
GCEKLSSLFD HKTGPYRMHK HLNDIAGRHA EQYITDSEDT VVPSQLVGST HKASTAKKHN  180
CKGKEPQSLN SSSFHVKHEA IEEEESNDSY ADSKLYYSRN ANQVTEEEKE KILSLASIQP  240
QNPAFVAVLR RNHRQRRNNF LTVPSRFAAD HLHERPQEII LCRPRRKDRW FVRYYYTSYI  300
RGFQNLQFFK FVHDNKLREE DTCVFELMKG AKRVTMTVHV IRKVGDRFDL VG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G389700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963040.10.0B3 domain-containing protein Os12g0592300
SwissprotQ2QMT21e-133Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A368QNG80.0A0A368QNG8_SETIT; Uncharacterized protein
STRINGSi024966m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-32B3 family protein