PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.3G388600.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 271aa MW: 27396.3 Da PI: 9.6958

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.3G388600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.3	9.6e-35	60	114	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny+++qPr+fC+aCrryWt GG++rnvPvGg++rk+ + Sevir.3G388600.1.p 60 EQCPRCASRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSIRNVPVGGSTRKRPR 114 68*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.8E-30	60	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.419	60	114	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-21	61	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEAPLHQSPV PLPLPPPQEE AVIGAALLRQ AEAARAMMAA AAAAQHQHQQ PPPAAAMGRE 60 QCPRCASRDT KFCYYNNYNT AQPRHFCRAC RRYWTLGGSI RNVPVGGSTR KRPRPARPTR 120 ALAAATAAAA TTPASSAPFD TSSSSSPVAP AAALQGGLLG SLLLGSASAS TLLALGAAPL 180 LEGRLGFGPG LGQPALLAGA NAAAGDLSRL DFGGAGPLLW PAAATVLEGD RAFPLPPPAA 240 ALWQKELAAA APPPVEAGGL HHGGSPHLLL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	114	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.3G388600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL954829	9e-74	AL954829.6 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	9e-74	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964157.2	2e-85	dof zinc finger protein DOF3.1-like
TrEMBL	A0A368QN25	5e-84	A0A368QN25_SETIT; Uncharacterized protein
STRING	GRMZM2G131897_P01	2e-61	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-23	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Sevir.3G388600.1.p