PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G371200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 182aa    MW: 20140.8 Da    PI: 9.4099
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G371200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-11114158348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +WT++E+ l++ +   + g+ W++ +r+  + Rt+ q+ s++qky+
  Sevir.3G371200.2.p 114 KWTEDEHRLFLAGLPFYRGN-WNAMSREYLTSRTASQIASHYQKYR 158
                         8*****************99.************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.632107162IPR017930Myb domain
SuperFamilySSF466891.44E-11109162IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-11110160IPR006447Myb domain, plants
SMARTSM007177.3E-7111160IPR001005SANT/Myb domain
CDDcd001671.43E-4114157No hitNo description
Gene3DG3DSA:1.10.10.606.7E-8114159IPR009057Homeodomain-like
PfamPF002493.3E-8114158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MHHDGYAAAA AAPPPALAAS PEPEQEPKWT RRDDKFLELL LFTRNTVSLR VASGIIVLTP  60
PVWDMEIAAM AVAAEEVVPE AVVPAAPPVA ARKNSAERAV GAGGGKRNKK AAEKWTEDEH  120
RLFLAGLPFY RGNWNAMSRE YLTSRTASQI ASHYQKYRNR EKQREHDNCK RASIHDITTT  180
PS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G371200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680627.11e-125LRR receptor-like serine/threonine-protein kinase EFR isoform X2
TrEMBLA0A368QMN61e-124A0A368QMN6_SETIT; Uncharacterized protein
STRINGSi039462m1e-82(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.15e-16MYB_related family protein