PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G371200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 23096.2 Da PI: 8.6944 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35 | 3.3e-11 | 140 | 184 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT++E+ l++ + + g+ W++ +r+ + Rt+ q+ s++qky+ Sevir.3G371200.1.p 140 KWTEDEHRLFLAGLPFYRGN-WNAMSREYLTSRTASQIASHYQKYR 184 8*****************99.************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 37 | 25 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.632 | 133 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-11 | 135 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-11 | 136 | 186 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-7 | 137 | 186 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-8 | 140 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.17E-4 | 140 | 183 | No hit | No description |
Pfam | PF00249 | 4.2E-8 | 140 | 184 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MHHDGYAAAA AAPPPALAAS PEPEQEPKWT RRDDKFLELL LFTRNTVSLR VASGIIGKTP 60 AQIHQRCTFM FAELSHVLES LEVLTPPVWD MEIAAMAVAA EEVVPEAVVP AAPPVAARKN 120 SAERAVGAGG GKRNKKAAEK WTEDEHRLFL AGLPFYRGNW NAMSREYLTS RTASQIASHY 180 QKYRNREKQR EHDNCKRASI HDITTTPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G371200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012700129.1 | 1e-149 | transcription factor SRM1-like isoform X3 | ||||
Refseq | XP_022680626.1 | 1e-146 | LRR receptor-like serine/threonine-protein kinase EFR isoform X1 | ||||
TrEMBL | K4AKN9 | 1e-108 | K4AKN9_SETIT; Uncharacterized protein | ||||
STRING | Si039462m | 1e-108 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 9e-16 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G371200.1.p |