PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G366400.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 572aa    MW: 60161.9 Da    PI: 6.5077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G366400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06191212526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f ++  C++Gd C +aHg
  Sevir.3G366400.4.p 191 PCPEFKKGAGCRRGDMCEYAHG 212
                         8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.5E-1023104IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-923105IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.5942596IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.8056196IPR002110Ankyrin repeat
SMARTSM003569.8E-4186213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4189214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258191214IPR000571Zinc finger, CCCH-type
SMARTSM0035687222245IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925222246IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MADASEAAAA ISARLLELAA EDDAEPMTPL MVAAAYGSVG CVDVLLSPPH LVDPNRASPA  60
SLSTALHLAA AGGASSAPAA VSRLLSAGAD PTLLDHLHRR PSDLVTLPPS SLPLKNHLLS  120
LLGARKEWPP DPSLPDIKNG AYASDDFRMY SFKVRACSRA YSHDWTECPF VHPGENARRR  180
DPRKYHYSCV PCPEFKKGAG CRRGDMCEYA HGVFESWLHP AQYRTRLCKD GVGCARRVCF  240
FAHTPEELRP LYVSSAGSRS AMEMAAAMGM GLPSPGASFT PPLSPSGGGG GVAGAWPQPN  300
VPALCLPGSA GNLHLSRLRT SLSARSMAAD ELLASADYDG LVGSPASVRS ARGKTLVPSN  360
LDDLFSAEMA VAAASHSPRF ADQGGAAFSP TRKAAMLNQF QQQQSLLSPR ATAAAVIPEP  420
VSPMSSRLLA ALAQREKMQQ QTLRSMSSRD LGSGASVLVG SPVTSSWSKW GIPSGTPDWG  480
ADDEELGRLK RSSSFELRSG ANGDEPDLSW VNTLVKEPTP EKPFINGTTA MESIGTLSQA  540
ASHEGIGGGE DNTAGVIGSW LEQLQLDEMV V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G366400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962884.10.0zinc finger CCCH domain-containing protein 67
RefseqXP_004962885.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLK3Z4S20.0K3Z4S2_SETIT; Uncharacterized protein
STRINGSi021540m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-135CCCH-type zinc finger protein with ARM repeat domain