PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G366400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 599aa    MW: 62919.9 Da    PI: 6.2374
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G366400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06218239526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f ++  C++Gd C +aHg
  Sevir.3G366400.2.p 218 PCPEFKKGAGCRRGDMCEYAHG 239
                         8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.75E-1018128IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1018131IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.59452123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.80588123IPR002110Ankyrin repeat
SMARTSM003569.8E-4213240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4216240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258218241IPR000571Zinc finger, CCCH-type
SMARTSM0035687249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.925249273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MADASEAAAA ISARLLELAA EDDAEALGDL LAAHPSLADE PAPWYSPARG AEPMTPLMVA  60
AAYGSVGCVD VLLSPPHLVD PNRASPASLS TALHLAAAGG ASSAPAAVSR LLSAGADPTL  120
LDHLHRRPSD LVTLPPSSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK  180
VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV  240
FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPEELRPLYV SSAGSRSAME MAAAMGMGLP  300
SPGASFTPPL SPSGGGGGVA GAWPQPNVPA LCLPGSAGNL HLSRLRTSLS ARSMAADELL  360
ASADYDGLVG SPASVRSARG KTLVPSNLDD LFSAEMAVAA ASHSPRFADQ GGAAFSPTRK  420
AAMLNQFQQQ QSLLSPRATA AAVIPEPVSP MSSRLLAALA QREKMQQQTL RSMSSRDLGS  480
GASVLVGSPV TSSWSKWGIP SGTPDWGADD EELGRLKRSS SFELRSGANG DEPDLSWVNT  540
LVKEPTPEKP FINGTTAMES IGTLSQAASH EGIGGGEDNT AGVIGSWLEQ LQLDEMVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G366400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962884.10.0zinc finger CCCH domain-containing protein 67
RefseqXP_004962885.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLK3Z4S20.0K3Z4S2_SETIT; Uncharacterized protein
STRINGSi021540m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-134CCCH-type zinc finger protein with ARM repeat domain