PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G345000.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 176aa    MW: 19578 Da    PI: 5.0284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G345000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-16243548
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Sevir.3G345000.4.p  2 SPNEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                        789***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.814147IPR017930Myb domain
CDDcd001673.40E-12143No hitNo description
SMARTSM007174.2E-10145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-19244IPR009057Homeodomain-like
PfamPF002493.2E-14242IPR001005SANT/Myb domain
SuperFamilySSF466891.56E-12249IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSPNEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS  60
SSLTYQSCYP DTPSTVGVEG QELHGGSGCI TSIMKGTPQD MDVYPMDQIW MEIEAPDVPS  120
SMGLDGGNEN ACSSLAAPLV PPAAWDYYPE AGWKMDDEIK MAPQFGYGEG VGPCF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G345000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0391311e-165BT039131.1 Zea mays full-length cDNA clone ZM_BFb0374B19 mRNA, complete cds.
GenBankBT0686401e-165BT068640.1 Zea mays full-length cDNA clone ZM_BFb0353K20 mRNA, complete cds.
GenBankHQ8586751e-165HQ858675.1 Zea mays clone UT1131 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962720.11e-127myb-related protein MYBAS2
SwissprotQ4JL766e-83MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLK3Z9831e-126K3Z983_SETIT; Uncharacterized protein
TrEMBLK3ZA501e-127K3ZA50_SETIT; Uncharacterized protein
STRINGSi023104m1e-127(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.21e-30myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]