PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G345000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 19578 Da PI: 5.0284 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ Sevir.3G345000.3.p 2 SPNEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 789***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.814 | 1 | 47 | IPR017930 | Myb domain |
CDD | cd00167 | 3.40E-12 | 1 | 43 | No hit | No description |
SMART | SM00717 | 4.2E-10 | 1 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.56E-12 | 2 | 49 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSPNEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRNMSPSSSS 60 SSLTYQSCYP DTPSTVGVEG QELHGGSGCI TSIMKGTPQD MDVYPMDQIW MEIEAPDVPS 120 SMGLDGGNEN ACSSLAAPLV PPAAWDYYPE AGWKMDDEIK MAPQFGYGEG VGPCF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G345000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039131 | 1e-165 | BT039131.1 Zea mays full-length cDNA clone ZM_BFb0374B19 mRNA, complete cds. | |||
GenBank | BT068640 | 1e-165 | BT068640.1 Zea mays full-length cDNA clone ZM_BFb0353K20 mRNA, complete cds. | |||
GenBank | HQ858675 | 1e-165 | HQ858675.1 Zea mays clone UT1131 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962720.1 | 1e-127 | myb-related protein MYBAS2 | ||||
Swissprot | Q4JL76 | 6e-83 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | K3Z983 | 1e-126 | K3Z983_SETIT; Uncharacterized protein | ||||
TrEMBL | K3ZA50 | 1e-127 | K3ZA50_SETIT; Uncharacterized protein | ||||
STRING | Si023104m | 1e-127 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 1e-30 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G345000.3.p |
Publications ? help Back to Top | |||
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