PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G333700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 278aa MW: 29618.3 Da PI: 10.1789 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.6 | 5.4e-45 | 13 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptdeelvv+yL++++ +++l+++ i++v+i+ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k Sevir.3G333700.1.p 13 LPPGFRFRPTDEELVVHYLRRRALSSPLPAAVDIPDVRILAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEK 101 79***************************9666**************43..3447899********************************* PP NAM 91 evlsk...........kgel....vglkktLvfykgrapkgektdWvmheyrl 128 +v ++ + + vg+k++Lvfy+g+ p+g+ktdWvmheyrl Sevir.3G333700.1.p 102 PVAVAvpapaskggqgQ--AqavlVGMKRSLVFYRGKPPTGSKTDWVMHEYRL 152 ***99999988776541..15566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-48 | 7 | 194 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.198 | 13 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 14 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MEVAKETVTK PRLPPGFRFR PTDEELVVHY LRRRALSSPL PAAVDIPDVR ILAHDPSDLL 60 PPGWSEQERY FFTCKEAKYV KGRRANRATG AGYWKATGKE KPVAVAVPAP ASKGGQGQAQ 120 AVLVGMKRSL VFYRGKPPTG SKTDWVMHEY RLAGAGLAPC RRAAVQPDGG DAAAANADVS 180 RPAEGWVLCR VFRKKGSASA NAAAAAPASP ADEGSDGEAE EGGGRAFIDF FARADARQRQ 240 RRASSPVVSS SCLTDASHEQ HGREQETTSR GRGGALP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-37 | 8 | 198 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-37 | 8 | 198 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-37 | 8 | 198 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-37 | 8 | 198 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 5e-37 | 8 | 198 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-37 | 8 | 198 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-37 | 8 | 198 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G333700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962652.1 | 0.0 | NAC domain-containing protein 83 | ||||
TrEMBL | K3Z8Q4 | 0.0 | K3Z8Q4_SETIT; Uncharacterized protein | ||||
STRING | Si022924m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-52 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G333700.1.p |