PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G306600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 448aa    MW: 47858.6 Da    PI: 8.3306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G306600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.1e-136387327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        ++ C++++rtG C++G++CkF+H+p
  Sevir.3G306600.1.p 63 EPDCSYYMRTGLCRFGATCKFNHPP 87
                        789********************97 PP
2zf-CCCH38.81.6e-12108132327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Sevir.3G306600.1.p 108 QPECQYYLKTGTCKFGATCKFHHPR 132
                         799********************96 PP
3zf-CCCH314.3e-10154178327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+ ++CkF+H+p
  Sevir.3G306600.1.p 154 EKECAYYLRTGQCKFASTCKFHHPP 178
                         679********************97 PP
4zf-CCCH406.6e-13313338227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+f+++tG Ck+G+ CkF+H++
  Sevir.3G306600.1.p 313 DQPECQFYMKTGDCKFGAVCKFNHPK 338
                         689*********************96 PP
5zf-CCCH37.54e-12358384127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C f++r+G+Ck+G++CkF H++
  Sevir.3G306600.1.p 358 PGEPVCTFYSRYGICKFGPNCKFDHPM 384
                         5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-66087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9486088IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-106387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-56588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-46686IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5111133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5150179IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587151179IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7154178IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455311339IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5314340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5317339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6356383IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7357384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99357385IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9359384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4362382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAAAGAGAGG GGGTGVGEGS SSSPAGVAIG PHHHGSAEEA MWQMTLGGGE SMEHGPFPER  60
IGEPDCSYYM RTGLCRFGAT CKFNHPPNRK LAVAAARMKG EYPYRVGQPE CQYYLKTGTC  120
KFGATCKFHH PREKAAIATR VQLNVLGYPI RPNEKECAYY LRTGQCKFAS TCKFHHPPPS  180
NTMVAVRGSI YSPGQSATSP GAYPGALTNW TLSRSASFIA SPRWPGHSGY AQVIVPQGLV  240
QVPGWTPYAA QMGSSSPDDQ QRTPGTNQYY TSSHQSETTG MGEHGMYPSY QAGSVPVGLY  300
AVQGENIFPE RPDQPECQFY MKTGDCKFGA VCKFNHPKER LIPAPNCALS PLGLPLRPGE  360
PVCTFYSRYG ICKFGPNCKF DHPMGTLMYG TSTSPTGDAP TMHYQLASSP GHSERLLDGG  420
SGRSHRISQS DSQQIPSGNG STEREAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G306600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3L6REA40.0A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
STRINGOPUNC12G08520.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-154zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]