PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G229800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 391aa    MW: 42793.1 Da    PI: 7.3502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G229800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05213232120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C+ C+k+F+r  n++ H+
  Sevir.3G229800.1.p 213 FICHVCSKTFNRYNNMQMHM 232
                         89*****************9 PP
2zf-C2H212.20.00055299321123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C  Cgk+F  k + ++H +++
  Sevir.3G229800.1.p 299 FGCRRCGKPFAVKGDWRTHEKNC 321
                         56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-5209236No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4213232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.138213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SuperFamilySSF576677.58E-5283319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVLSACAIME GAAAGSFSVP YYEWLKPRSS SPPLPPSPSS SSSTSSTLST PSVDRSAADD  60
DHGRDAMMCL PLLGRLEGRA TTPDRGQNPI KEELMSNIST TGTRGGAPGV DLNIGLPAIG  120
GYSSEEAPMD EEDDDEEEDF EEEGEKTRTH DKCKEEEAGE QANSEMAVES VEGSESDYLR  180
VGGEEGIKGF VGSRGRRYWI PTPAQILVGP VQFICHVCSK TFNRYNNMQM HMWGHGREYR  240
KGPESLKGTQ AATLALLKLP CYCCAPGCRN NVAHPRARPL KDFRTLQTHY KRKHGDKHFG  300
CRRCGKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH LPVAPDQAAA  360
VPPLLKHKER IIRFDQAVVA PWNGAHAAHA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G229800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026581e-169AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961925.10.0protein TRANSPARENT TESTA 1
SwissprotQ8W0316e-94ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLK3Z6X60.0K3Z6X6_SETIT; Uncharacterized protein
STRINGSi022296m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-93WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]