PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G211900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 563aa    MW: 59520.2 Da    PI: 6.0681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G211900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32216273260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkvers  d++v+ei+Y+g Hnh+k
  Sevir.3G211900.1.p 216 DDGYNWRKYGQKNMKGSENPRSYYKCSFPGCPTKKKVERSP-DGQVTEIVYKGAHNHPK 273
                         8****************************************.***************85 PP
2WRKY101.64.4e-32389447159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+++ver+ +d+++v++tYeg+Hnh+
  Sevir.3G211900.1.p 389 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRRHVERACHDTRAVVTTYEGKHNHD 447
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-29206274IPR003657WRKY domain
PROSITE profilePS5081124.26210274IPR003657WRKY domain
SuperFamilySSF1182904.32E-25211274IPR003657WRKY domain
SMARTSM007745.8E-36215273IPR003657WRKY domain
PfamPF031062.6E-25216272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-35374449IPR003657WRKY domain
SuperFamilySSF1182901.31E-28381449IPR003657WRKY domain
PROSITE profilePS5081137.929384449IPR003657WRKY domain
SMARTSM007742.6E-36389448IPR003657WRKY domain
PfamPF031063.0E-24390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MTSTPGSFRT LANSGPVALS FATSSFSNFL GGPASSGGAD SGLSKFKAMP PPSLPLSHPP  60
ASPSAFLNAF SGFLDSPILL TPSLFPSPTT GAIPSEPFNW MGTAENLQAS VKDEQRQYTD  120
FTFQTAAPVP ETVTAALPAA SFPQSSSMLM APLGGLGDSY NGELQQQQPW SYQEPTTQYE  180
APSAATTQPD MLGNGGYSAV PAPASFREQS NRPSSDDGYN WRKYGQKNMK GSENPRSYYK  240
CSFPGCPTKK KVERSPDGQV TEIVYKGAHN HPKPQSTRRS SSSAPAPAAS SYVLQSASDA  300
AAEHSFGALS GTPVATPENS SGSFGDDEIN GVSSRFAGNF GAEELDDDEP DSKKWRRDGG  360
DGEGVPVAGN RTVREPRVVV QTMSDVDVLD DGYRWRKYGQ KVVKGNPNPR SYYKCTTAGC  420
PVRRHVERAC HDTRAVVTTY EGKHNHDVPP ARGTASLYRA ALAAQQSAAG YQQQGGAAVP  480
ADGRFGFGAG SSHGAFSGAP AQAAESSGGF ALSGFGNQVG TAYSYASQQQ QQQQSDAMYT  540
YAPLAKDEPR DDLSFFEQPL LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35216449877Probable WRKY transcription factor 4
2lex_A4e-35216449877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G211900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566840.0EU956684.1 Zea mays clone 1570668 WRKY70 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961763.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-156WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLK3Z5160.0K3Z516_SETIT; Uncharacterized protein
STRINGSi021634m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-92WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]