PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G196400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 249aa    MW: 26237.5 Da    PI: 9.8223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G196400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1890139255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr ++ +gr++AeIrd +     r +r++lg+++++ eAa a+++a+ +l+g
  Sevir.3G196400.1.p  90 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDSPVEAAMAYDRAAVALRG 139
                         6********.**********88.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.58E-2889146No hitNo description
PfamPF008477.8E-1290139IPR001471AP2/ERF domain
SMARTSM003808.4E-3290153IPR001471AP2/ERF domain
PROSITE profilePS5103221.56290147IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2190147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-2990146IPR001471AP2/ERF domain
PRINTSPR003675.0E-991102IPR001471AP2/ERF domain
PRINTSPR003675.0E-9113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPLAETTEQS NQAAARPTSD GRRVVRVCVR EMQMEWDMGG GGGGHGGGAV GDGGARAGGL  60
VVGGVVVGGG DQHHHHHLQH HQQQQRVEAH YRGVRKRPWG RYAAEIRDPW RKTRVWLGTY  120
DSPVEAAMAY DRAAVALRGS KARLNFGGDG GAGGRGRDPP VQLLRMLQPP GCHQLGGLGM  180
GRQHPGHVIY SLPSWLHHEA AVASPVGSLL GAADVAASQP STALELRTGP KALPFDLNEP  240
PPSLLFGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1990146562ATERF1
3gcc_A1e-1990146562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G196400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404201e-69BT040420.1 Zea mays full-length cDNA clone ZM_BFc0090F19 mRNA, complete cds.
GenBankEU9735031e-69EU973503.1 Zea mays clone 399837 mRNA sequence.
GenBankKJ7269421e-69KJ726942.1 Zea mays clone pUT3488 AP2-EREBP transcription factor (EREB93) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961629.11e-178ethylene-responsive transcription factor 8
TrEMBLA0A368QGJ01e-176A0A368QGJ0_SETIT; Uncharacterized protein
STRINGSi024479m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-29ERF domain protein 12