PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.3G196200.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 523aa MW: 57396.3 Da PI: 9.098 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4.1e-08 | 28 | 50 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C f+a+ G+C+ G +C+F H+ Sevir.3G196200.4.p 28 TKICTFYAQ-GWCQNGKNCTFLHD 50 789******.*************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 7.98E-8 | 25 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.525 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0032 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-6 | 28 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-7 | 28 | 52 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 523 aa Download sequence Send to blast |
MLQPHVNALR LSSPSLGEYP ENKTKRVTKI CTFYAQGWCQ NGKNCTFLHD REGFGSAKAG 60 LLAPAGSGNH RGSEEGSQVQ HQSNLKVPQF KYAEGSSKYE LYRSLVHVYG EDNERLAHLA 120 DKQNLTTPGV SQGLPGSIDD SFTKRPTAPI NELVRSLVVH EKNHKPFMGH PIGLAAETRR 180 YLDVNTLNSD HQFQSSGMSI SSDTLQFREK LSAYGGTTDN LPNTHQKEHR SSHASYSSCN 240 LTGFRNLGYA TSEISLGSPS LRATSQLGIQ SHHLFRTGIE KVNLHRHIDV DKGCGTSRPA 300 LLSSSSLDPS IISAGPLSPI KDEVWETSVP FVPSFSFPTP PGSPYDPFVD CIEPPKVGNT 360 DNLKSSNISF SISSQHTNPD VITDKSLNRD DKLTRNMSAI GANGPACLIA SDRGRSSSLD 420 VNNRVKACDR KNNVGSSDEK ARDFRFHLAE HIKDLIKPIW KEGNLSKDAH KQVVKKSVEK 480 VVDSIEPNQV PTTKEMIAKY ITTNGSKIEK LVKAYVDRHR TA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.3G196200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961627.1 | 0.0 | zinc finger CCCH domain-containing protein 36 isoform X2 | ||||
Swissprot | Q75K81 | 1e-156 | C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A368QGQ9 | 0.0 | A0A368QGQ9_SETIT; Uncharacterized protein | ||||
STRING | Si021551m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-11 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.3G196200.4.p |
Publications ? help Back to Top | |||
---|---|---|---|
|