PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G196200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 582aa    MW: 63477.1 Da    PI: 8.8074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G196200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-0887109326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         t++C f+a+ G+C+ G +C+F H+
  Sevir.3G196200.2.p  87 TKICTFYAQ-GWCQNGKNCTFLHD 109
                         789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.52584111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-884109IPR000571Zinc finger, CCCH-type
SMARTSM003560.003284110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-787111IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-687109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MASAGGGGGA TGEIPEVDME VVERPPEEPG RVGLKRVRDP HSALGSYGFY GVTTAEKKPM  60
LQPHVNALRL SSPSLGEYPE NKTKRVTKIC TFYAQGWCQN GKNCTFLHDR EGFGSAKAGL  120
LAPAGSGNHR GSEEGSQVQH QSNLKVPQFK YAEGSSKYEL YRSLVHVYGE DNERLAHLAD  180
KQNLTTPGVS QGLPGSIDDS FTKRPTAPIN ELVRSLVVHE KNHKPFMGHP IGLAAETRRY  240
LDVNTLNSDH QFQSSGMSIS SDTLQFREKL SAYGGTTDNL PNTHQKEHRS SHASYSSCNL  300
TGFRNLGYAT SEISLGSPSL RATSQLGIQS HHLFRTGIEK VNLHRHIDVD KGCGTSRPAL  360
LSSSSLDPSI ISAGPLSPIK DEVWETSVPF VPSFSFPTPP GSPYDPFVDC IEPPKVGNTD  420
NLKSSNISFS ISSQHTNPDV ITDKSLNRDD KLTRNMSAIG ANGPACLIAS DRGRSSSLDV  480
NNRVKACDRK NNVGSSDEKA RDFRFHLAEH IKDLIKPIWK EGNLSKDAHK QVVKKSVEKV  540
VDSIEPNQVP TTKEMIAKYI TTNGSKIEKL VKAYVDRHRT A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G196200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961627.10.0zinc finger CCCH domain-containing protein 36 isoform X2
SwissprotQ75K811e-156C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A368QGT40.0A0A368QGT4_SETIT; Uncharacterized protein
STRINGSi021551m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-11C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]