PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G196200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 582aa MW: 63477.1 Da PI: 8.8074 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 87 | 109 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++C f+a+ G+C+ G +C+F H+ Sevir.3G196200.1.p 87 TKICTFYAQ-GWCQNGKNCTFLHD 109 789******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.525 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-8 | 84 | 109 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0032 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-7 | 87 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.3E-6 | 87 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MASAGGGGGA TGEIPEVDME VVERPPEEPG RVGLKRVRDP HSALGSYGFY GVTTAEKKPM 60 LQPHVNALRL SSPSLGEYPE NKTKRVTKIC TFYAQGWCQN GKNCTFLHDR EGFGSAKAGL 120 LAPAGSGNHR GSEEGSQVQH QSNLKVPQFK YAEGSSKYEL YRSLVHVYGE DNERLAHLAD 180 KQNLTTPGVS QGLPGSIDDS FTKRPTAPIN ELVRSLVVHE KNHKPFMGHP IGLAAETRRY 240 LDVNTLNSDH QFQSSGMSIS SDTLQFREKL SAYGGTTDNL PNTHQKEHRS SHASYSSCNL 300 TGFRNLGYAT SEISLGSPSL RATSQLGIQS HHLFRTGIEK VNLHRHIDVD KGCGTSRPAL 360 LSSSSLDPSI ISAGPLSPIK DEVWETSVPF VPSFSFPTPP GSPYDPFVDC IEPPKVGNTD 420 NLKSSNISFS ISSQHTNPDV ITDKSLNRDD KLTRNMSAIG ANGPACLIAS DRGRSSSLDV 480 NNRVKACDRK NNVGSSDEKA RDFRFHLAEH IKDLIKPIWK EGNLSKDAHK QVVKKSVEKV 540 VDSIEPNQVP TTKEMIAKYI TTNGSKIEKL VKAYVDRHRT A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G196200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961627.1 | 0.0 | zinc finger CCCH domain-containing protein 36 isoform X2 | ||||
Swissprot | Q75K81 | 1e-156 | C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A368QGT4 | 0.0 | A0A368QGT4_SETIT; Uncharacterized protein | ||||
STRING | Si021551m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11010 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-11 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G196200.1.p |
Publications ? help Back to Top | |||
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