PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G182700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family VOZ
Protein Properties Length: 590aa    MW: 64831.4 Da    PI: 5.3375
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G182700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ411.71.3e-1262784951217
                 VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 
                         p+ps++lgpkcalwdc rp+ gse+  dyc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lfaal akvqgk+vgip+c gaat+kspw
  Sevir.3G182700.1.p 278 PSPSQYLGPKCALWDCGRPVGGSEDSGDYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFAALIAKVQGKNVGIPVCGGAATSKSPW 368
                         89**************************************9799*********************************************** PP

                 VOZ  91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181
                         na+elfdlsllege++rewlffd+prrafesgnrkqrslpdysgrgwhesrkq+mk+f+glkrsyymdpqpsss+ewhl+eyein++dala
  Sevir.3G182700.1.p 369 NAPELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYSGRGWHESRKQLMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINSSDALA 459
                         ******************************************************************************************* PP

                 VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrlta 217
                         lyrle+k++d+kksak+k++++sl+++q++++rlta
  Sevir.3G182700.1.p 460 LYRLEYKSCDSKKSAKSKLASSSLNEIQQQMVRLTA 495
                         **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MAGDPADGGG AAHPASGGKG SRSSTRHRQF RDRAKNRVDD LQEMFSGLQS ARKESRSADA  60
AVLEEQVHQM LREWRAELSV PSPASSFQNS QGNNREASDP PSETLRLLQL AVAEEEDDAT  120
SKLAVPRSPQ QVPAFHQNQG HGHGQDVQMP NLGQQGEAVA GGAAPLQQPL GQGVQGDCGE  180
VAAVANAMFN DQFNDQMYYI DHELSIDDFL QDDDYKINLP GSNEDHFNNL HEVGPLENQQ  240
FDLPLDLPPH SYIDANNSEQ NTGDVFVHMS DLLTTIWPSP SQYLGPKCAL WDCGRPVGGS  300
EDSGDYCNPY HAGLALNDDG LLGTRPVMRP RGIDLKDGPL FAALIAKVQG KNVGIPVCGG  360
AATSKSPWNA PELFDLSLLE GESLREWLFF DTPRRAFESG NRKQRSLPDY SGRGWHESRK  420
QLMKDFAGLK RSYYMDPQPS SSHEWHLFEY EINSSDALAL YRLEYKSCDS KKSAKSKLAS  480
SSLNEIQQQM VRLTADSPVE NKRTARSKPK ANHKNTNANV FAHVNTPSQV DAPNAYQAAP  540
QVNQMTFLNE NVVYGPHLPH SENVVYGPHL PHGYSAEGSS FFWNPRDGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G182700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0552840.0BT055284.1 Zea mays full-length cDNA clone ZM_BFc0117C20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961501.10.0transcription factor VOZ1
TrEMBLK3Z4V00.0K3Z4V0_SETIT; Uncharacterized protein
STRINGSi021568m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23433888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.21e-133vascular plant one zinc finger protein