PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G144400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24088.3 Da PI: 11.3345 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 8 | 44 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +v++++ +G g W+ ar g++Rt+k+c++rw++yl Sevir.3G144400.1.p 8 IVNYIAAHGEGAWNNLARAAGLNRTGKSCRLRWLNYL 44 7999*******************************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 50 | 93 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+e++v++ +++G++ W++Ia++++ gRt++++k++w++ Sevir.3G144400.1.p 50 RGNMTAEEQERIVQLQARWGNK-WSRIAKHLP-GRTDNEVKNFWRT 93 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.771 | 1 | 44 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.74E-23 | 7 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 8 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-4 | 8 | 44 | No hit | No description |
SMART | SM00717 | 1.7 | 8 | 46 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-8 | 8 | 44 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.483 | 45 | 99 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-14 | 49 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 50 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 52 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.14E-11 | 52 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAHARHVIVN YIAAHGEGAW NNLARAAGLN RTGKSCRLRW LNYLRPDVRR GNMTAEEQER 60 IVQLQARWGN KWSRIAKHLP GRTDNEVKNF WRTKIQQKKH KNKEHSAIET IITVAGVCSG 120 MACKDTPAIT EDQGSSNYSG RTGVTQDYGI VRQQQPNISS AADYLSLRCA WRSHWRWRLG 180 LRSGVPGRVG RELLGHRRRL WTTMQSYQGS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-18 | 8 | 98 | 38 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G144400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 3e-33 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AC120990 | 3e-33 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. | |||
GenBank | AP014961 | 3e-33 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 3e-33 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699923.1 | 1e-119 | transcription factor MYB24 | ||||
TrEMBL | A0A368QF26 | 1e-148 | A0A368QF26_SETIT; Uncharacterized protein | ||||
STRING | Si024431m | 1e-102 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 3e-52 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G144400.1.p |