PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G141700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 295aa    MW: 31540 Da    PI: 5.5478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G141700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.4e-25125186159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC ++k+v+r+a dp + +++Y+g H++ 
  Sevir.3G141700.1.p 125 LDDGISWRKYGQKDILGAKYPRAYFRCTHRhtqGCAATKHVQRAAGDPLLYDVVYHGAHTCA 186
                         58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-26115187IPR003657WRKY domain
PROSITE profilePS5081121.23120183IPR003657WRKY domain
SuperFamilySSF1182902.48E-24120186IPR003657WRKY domain
SMARTSM007741.7E-37125187IPR003657WRKY domain
PfamPF031061.8E-24126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEVCGVGGGE KSALASELAQ MQAMVRELGA HMDQQDLPAA VRELCGELCG ELASSVDRSI  60
RIARSCGLAG ADSPGSRDGS PRSASDGTQH PAAAAGGNAQ SKRSRKGTPC VRRQVRVASV  120
DMAPLDDGIS WRKYGQKDIL GAKYPRAYFR CTHRHTQGCA ATKHVQRAAG DPLLYDVVYH  180
GAHTCAQAAH PGAEQLRQQL QLQPEPGHAD AGQEQSSPPL ALQETEGLQA GPEPMTPYWF  240
GAPAPGDGAD FPLLSPTGLE WQLRSMDHET QFEEFYTNAA DPSQWDYQDL YATN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19119185268OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G141700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586191e-124KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700437.10.0probable WRKY transcription factor 30 isoform X1
TrEMBLK3Z8H30.0K3Z8H3_SETIT; Uncharacterized protein
STRINGSi022843m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-33WRKY DNA-binding protein 30