PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G134700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 556aa    MW: 61361.3 Da    PI: 4.7237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G134700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.34.2e-25211672128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratk....sgyWkat 86 
                         ppG++F Pt++el+  yL+ k+eg++ +l  vi+ev i++++P +L +++k+ +e++wyfF+ r+ ++++ ++++nr+++    +++Wkat
  Sevir.3G134700.1.p  21 PPGYHFVPTEQELL-SYLRSKIEGQEQPL-AVINEVAILDWQPGSLVEAYKGyGENKWYFFTVREPSSSNkEEEPNRKVRvpgvKATWKAT 109
                         9*************.9**********999.89**************8544443888*******999888636678887666667899**** PP

                 NAM  87 gkdkevlskkgel..................vglkktLvfykgrapkgektdWvmheyrl 128
                         g+  ++ +++ ++                  vg+k++L++ + +a++    +W mhey l
  Sevir.3G134700.1.p 110 GSVAPIAAARAKQqddggkpaeeeeeeekviVGTKRVLIYQSSDAEE--DGKWSMHEYIL 167
                         *******984444456777777888888888*********9777766..89*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-2412184IPR003441NAC domain
PROSITE profilePS5100526.16820184IPR003441NAC domain
PfamPF023655.0E-1621166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MEAAVVQEEQ HHELAPQLQF PPGYHFVPTE QELLSYLRSK IEGQEQPLAV INEVAILDWQ  60
PGSLVEAYKG YGENKWYFFT VREPSSSNKE EEPNRKVRVP GVKATWKATG SVAPIAAARA  120
KQQDDGGKPA EEEEEEEKVI VGTKRVLIYQ SSDAEEDGKW SMHEYILKGH AKIGQYALCS  180
IQRKQHSDTV DNAGEGTSSR KRTKATNGDP GKAKKRRTTK PDTQPEGLLL QQLQETGSIE  240
APLKQKSRIR RTATKRKNKA SVQDDEGQQH QEVAPVSSVK PPLTPPQQAP SQALQQSAPL  300
LFAAPLQGYT SPTDGMLGAS APMHEEGRRA NSFQYDDDMP LSDLDLENIM TLCEQEERPQ  360
SFADNEFITG SHAQYQQCYQ QDDHDMFGDH DQYLYPELQN FPGNITQNNS SWNQGQLQNY  420
QQEIIGGAFA APDLQHTDAQ HYGQSPYGQL CYSSPLPQTG HYSSDHFTGS VEGDSAASGS  480
DGDMGLTAAE LFAIDALRDY DPQDCVGAQG SGSNPEAFQR QDKLLWPCGQ QQHAASGHGG  540
DGPPPSRCAS EFWER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-141718714168NO APICAL MERISTEM PROTEIN
1ut4_B4e-141718714168NO APICAL MERISTEM PROTEIN
1ut7_A4e-141718714168NO APICAL MERISTEM PROTEIN
1ut7_B4e-141718714168NO APICAL MERISTEM PROTEIN
3swm_A5e-141718717171NAC domain-containing protein 19
3swm_B5e-141718717171NAC domain-containing protein 19
3swm_C5e-141718717171NAC domain-containing protein 19
3swm_D5e-141718717171NAC domain-containing protein 19
3swp_A5e-141718717171NAC domain-containing protein 19
3swp_B5e-141718717171NAC domain-containing protein 19
3swp_C5e-141718717171NAC domain-containing protein 19
3swp_D5e-141718717171NAC domain-containing protein 19
4dul_A4e-141718714168NAC domain-containing protein 19
4dul_B4e-141718714168NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199216RKRTKATNGDPGKAKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G134700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3H9880.0A0A2S3H988_9POAL; Uncharacterized protein
STRINGPavir.J26931.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-15NAC-like, activated by AP3/PI