PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G132200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 322aa    MW: 34713.8 Da    PI: 5.2865
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G132200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY826.2e-26154212259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers   p v+++tY  eH h 
  Sevir.3G132200.1.p 154 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKLVERSPAKPGVLVVTYIAEHCHA 212
                         699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.311148214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-26149214IPR003657WRKY domain
SuperFamilySSF1182904.05E-23151214IPR003657WRKY domain
SMARTSM007749.0E-31153213IPR003657WRKY domain
PfamPF031063.5E-21155211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFSNDWDLQ AVVRSCGTAA CSGSGSEAAP PPRREEDRRV VLVGRAAVAA APEFLVGRPV  60
RPPAALGDLD YLDLEHELPR APFSITPSSE RGPLDHEVLL SFPAASTSGQ QLLQQRKQPG  120
RKPGVRTPRP KRSKKSQLKK VVCEVPVADG GVSTDLWAWR KYGQKPIKGS PYPRGYYKCS  180
SLKACMARKL VERSPAKPGV LVVTYIAEHC HAVPTMLNAL AGTTRHRPAS PDGDGHQASH  240
GASDEASAGR REEDSADASS MTVDGGGGAE TADDENEPWQ QADMALDDYP LDLDDLLGPF  300
EDGFDRFFED DDGVLERRVS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-17135215280Disease resistance protein RRS1
5w3x_D1e-17135215280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G132200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114162e-96AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706012e-96AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961083.10.0WRKY transcription factor 22
TrEMBLK3Z8060.0K3Z806_SETIT; Uncharacterized protein
STRINGSi022676m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-37WRKY family protein