PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G114000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 391aa    MW: 41762.7 Da    PI: 7.4239
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G114000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08113133526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G Ck+Gd C FaHg
  Sevir.3G114000.1.p 113 ACPDFRK-GGCKRGDACEFAHG 133
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.086597IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159109135IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-7113133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5113135IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258143167IPR000571Zinc finger, CCCH-type
SMARTSM0035612143166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMMMGEGAHA PPWQQPPVSG GGMDGDDASP YTLLAALRHY LPSNEAAAAY DEDDEEALAA  60
VDAYACDEFR MYEFKVRRCS RGRSHDWTDC PYAHPGEKAR RRDPRRYHYS GTACPDFRKG  120
GCKRGDACEF AHGVFECWLH PARYRTQPCK DGTACRRRVC FFAHTPDQLR VLPPQQQSSP  180
RGGAASSPLA ESYDGSPLRR QAFESYLTKS GIMSSSPTST LVSPPRSPPS ESPPMSPDAA  240
GALRRGSWPG VGSPVNDVLA SLRQLRLGGG GSPRSAPSGG SFLAGYPFGS PKSPAALYSL  300
PSTPTRPSTV TVTTPSGATV MTVERLNLGL IGDQELVMER VESGRALREK VFERLSKEAT  360
VPNDAAASAN AEGAAPAAAP DVGWVSDLIN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G114000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9692390.0EU969239.1 Zea mays clone 327364 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960911.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A368QDQ80.0A0A368QDQ8_SETIT; Uncharacterized protein
STRINGSi024826m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-73C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]