PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G049700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 594aa    MW: 62661.1 Da    PI: 8.2917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G049700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.8e-09258279526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f+++G C+ Gd+C +aHg
  Sevir.3G049700.1.p 258 PCPEFRKGGACRKGDNCEYAHG 279
                         8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.5E-972170IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.27572142IPR020683Ankyrin repeat-containing domain
SMARTSM00248150072102IPR002110Ankyrin repeat
SuperFamilySSF484031.46E-674147IPR020683Ankyrin repeat-containing domain
SMARTSM002480.12107139IPR002110Ankyrin repeat
PROSITE profilePS5008810.579107142IPR002110Ankyrin repeat
SuperFamilySSF902294.58E-5253283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441253281IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6253280IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6258279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-5258281IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643289313IPR000571Zinc finger, CCCH-type
SMARTSM0035689289312IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MCSGPRKPST PPLPAATAKE SAVMAALLLE LAAADDLVAF RRAVEDDKVS ALDASCQWYG  60
PSAASGARLR LEVRTPAMVA ALYGSTGVLA YVLSAAPAEA ARASPTDGAT PLHLAAAGGA  120
AGAVAAAHLL LAAGASADAL AFSGLRAGDL LPRANAAAER DRALRVLLKS PAASPSSSPK  180
KSASPPLAPE PRKEYPPDLT LPDLKTGLFS TDEFRMYSFK VKPCSRAYSH DWTECPFVHP  240
GENARRRDPR RYSYSCVPCP EFRKGGACRK GDNCEYAHGV FECWLHPAQY RTRLCKDEVG  300
CARRICFFAH KPEELRAVNP SAVSVGMQPA VSSPRSSPPN GLDMGGMLNP AAWPSSPASR  360
LKTALAGREL DFDLELLALD QYQQKLFDKV SSPRASWGSA GGIGSPLPAA APARAVPDYT  420
DLLGSVDPAM LSQLHALSLK QAGDMPAYNS MADAQLHMPT SPMVGANTAF GLDHSMAKAI  480
MSSRASAFAK RSQSFIDRGG RAPAARSLMS QPTTGAPSML SDWGSPDGKL DWGVQGDELH  540
KFRKSASFAF RGQSPAPVPT PAEPDVSWVN SLVKDGHAGD IFAQWPEQEQ MVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.3G049700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969790.0FP096979.1 Phyllostachys edulis cDNA clone: bphyem206f17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960375.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLK3Z4T90.0K3Z4T9_SETIT; Uncharacterized protein
STRINGSi021557m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-110C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]