PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G003900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 34679.8 Da PI: 5.7834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 4e-53 | 9 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPt+eelv +yL++kv++++++ ++i+evd+y++ePwdL++ ++++ewyfFs +d+ky++g+r+nrat++ Sevir.3G003900.2.p 9 VPPGFRFHPTEEELVGYYLARKVARSSCDDLDIIQEVDLYRIEPWDLQErcklggaaghdDGGQTTSEWYFFSYKDRKYPSGTRTNRATAA 99 69*************************9999****************95577777665442222455************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg+dk+vls +++++g++ktLvfykgrap+g+ktdW+mheyrl Sevir.3G003900.2.p 100 GFWKATGRDKPVLS-SSRVIGMRKTLVFYKGRAPNGRKTDWIMHEYRL 146 **************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-57 | 8 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.92 | 9 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 10 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MMVEQGELVP PGFRFHPTEE ELVGYYLARK VARSSCDDLD IIQEVDLYRI EPWDLQERCK 60 LGGAAGHDDG GQTTSEWYFF SYKDRKYPSG TRTNRATAAG FWKATGRDKP VLSSSRVIGM 120 RKTLVFYKGR APNGRKTDWI MHEYRLQPSN HQEEGWVVCR AFQKPIPNQR PFVFPTYATP 180 AGYCYDHLPS MDGSHQYLQV GGGPAPHALA AGNSFFPQQF YSDDDDLLES KKHDNLFSSI 240 LPPLESPTAA IAACAQQRAA AHVVASENDD ELMVQGGGGH AAAAAAGAID WNFLDTLLST 300 TTSQLLEPST LLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-49 | 9 | 164 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G003900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373002 | 9e-59 | AK373002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3017O09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959950.1 | 0.0 | NAC domain-containing protein 30 isoform X1 | ||||
TrEMBL | A0A368Q9S3 | 0.0 | A0A368Q9S3_SETIT; Uncharacterized protein | ||||
STRING | Si022723m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 2e-85 | vascular related NAC-domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G003900.2.p |