PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.3G003900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 36715.3 Da PI: 6.5064 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.7 | 4.5e-53 | 27 | 164 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........kvkaeekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPt+eelv +yL++kv++++++ ++i+evd+y++ePwdL++ ++++ewyfFs +d+ky++g+r+nrat++ Sevir.3G003900.1.p 27 VPPGFRFHPTEEELVGYYLARKVARSSCDDLDIIQEVDLYRIEPWDLQErcklggaaghdDGGQTTSEWYFFSYKDRKYPSGTRTNRATAA 117 69*************************9999****************95577777665442222455************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+Wkatg+dk+vls +++++g++ktLvfykgrap+g+ktdW+mheyrl Sevir.3G003900.1.p 118 GFWKATGRDKPVLS-SSRVIGMRKTLVFYKGRAPNGRKTDWIMHEYRL 164 **************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-57 | 22 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.92 | 27 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-27 | 28 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MCFALLGRSC KVIRNRSVMM VEQGELVPPG FRFHPTEEEL VGYYLARKVA RSSCDDLDII 60 QEVDLYRIEP WDLQERCKLG GAAGHDDGGQ TTSEWYFFSY KDRKYPSGTR TNRATAAGFW 120 KATGRDKPVL SSSRVIGMRK TLVFYKGRAP NGRKTDWIMH EYRLQPSNHQ EEGWVVCRAF 180 QKPIPNQRPF VFPTYATPAG YCYDHLPSMD GSHQYLQVGG GPAPHALAAG NSFFPQQFYS 240 DDDDLLESKK HDNLFSSILP PLESPTAAIA ACAQQRAAAH VVASENDDEL MVQGGGGHAA 300 AAAAGAIDWN FLDTLLSTTT SQLLEPSTLL Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 27 | 182 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.3G003900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373002 | 9e-59 | AK373002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3017O09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959950.1 | 0.0 | NAC domain-containing protein 30 isoform X1 | ||||
TrEMBL | A0A368Q9S3 | 0.0 | A0A368Q9S3_SETIT; Uncharacterized protein | ||||
STRING | Si022723m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 4e-85 | vascular related NAC-domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.3G003900.1.p |