PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G448900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 325aa MW: 35542.2 Da PI: 5.1249

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G448900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.6e-55	19	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtd el+v+yL++k+ ++++++ vi+evd++k+ePwdLp k+k +ekewyfF+++d+ky+tg r+nrat sgyWkatgkdke Sevir.2G448900.1.p 19 LPPGFRFHPTDGELIVDYLTRKALNRRFSC-IVITEVDLNKTEPWDLPGKAKMGEKEWYFFCHKDRKYPTGARTNRATPSGYWKATGKDKE 108 79**************************.99***********99999********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ ++ lvg++ktLvfy+grap+g kt Wvmheyrle Sevir.2G448900.1.p 109 IYR-GRDLVGMRKTLVFYTGRAPRGGKTPWVMHEYRLE 145 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-63	17	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.82	19	168	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	20	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSDVSATMNL GEEESPLVLP PGFRFHPTDG ELIVDYLTRK ALNRRFSCIV ITEVDLNKTE 60 PWDLPGKAKM GEKEWYFFCH KDRKYPTGAR TNRATPSGYW KATGKDKEIY RGRDLVGMRK 120 TLVFYTGRAP RGGKTPWVMH EYRLEGKLPP NLPRAAKDEW AVCRVFNKDL AAKAGQMAPA 180 AAVMEPTMDF EDIFGAELPP LMDSPFAVDD LLDLKGGAGA GSSGSGAAAG TGSGGGYQVK 240 AEQQNEPPQP IQEPTYFSLP AASNPGGYPH QAIRERCPEQ APALPSPSVG ETALDADMSS 300 RPYPELDDLL LDGGYLDYSN MWKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-54	15	173	13	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-54	15	173	13	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-54	15	173	13	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-54	15	173	13	170	NO APICAL MERISTEM PROTEIN
4dul_A	4e-54	15	173	13	170	NAC domain-containing protein 19
4dul_B	4e-54	15	173	13	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G448900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958723.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	4e-81	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K3ZV95	0.0	K3ZV95_SETIT; Uncharacterized protein
STRING	Si030526m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-81	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Sevir.2G448900.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]