PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G448500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 364aa    MW: 39297.4 Da    PI: 6.7358
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G448500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.83.1e-51141411128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++PwdLp+k+  ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk+
  Sevir.2G448500.1.p  14 LPPGFRFHPTDEELILHYLRNRAASAPCPV-PIIADVDIYKFNPWDLPSKALYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKP 103
                         79****************************.88***************77777899*********************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ +ge vg+kk Lvfy+gr p+g+kt+W+mheyrl
  Sevir.2G448500.1.p 104 IHDAtTGESVGVKKALVFYEGRPPRGTKTNWIMHEYRL 141
                         **9878999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-643176IPR003441NAC domain
PROSITE profilePS5100560.57514176IPR003441NAC domain
PfamPF023651.7E-2615141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEMMSAAQAA TSQLPPGFRF HPTDEELILH YLRNRAASAP CPVPIIADVD IYKFNPWDLP  60
SKALYGDGEY YFFSPRDRKY PNGIRPNRAA GSGYWKATGT DKPIHDATTG ESVGVKKALV  120
FYEGRPPRGT KTNWIMHEYR LAAANNPLAA AYRPPSKFRN VSMRLDDWVL CRIYRKSGQA  180
SPMVPPLADY EHLDHDDPNS SGGFDDLCGF AYAPTSSSGA TSTTASSAMI PQPPALLPRL  240
PKIPSISELL DEYALAQIFD TTTPAEQDLL AVHPSLNQLL AVGGDSSAHP DLTTIYSPST  300
QAAGGKRKTM LSPDDECAAM IHPPAAAKRL NGSCFDAPQP ASGLPATTTS VLGGLNHHML  360
PQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-711418120173NAC domain-containing protein 19
3swm_B4e-711418120173NAC domain-containing protein 19
3swm_C4e-711418120173NAC domain-containing protein 19
3swm_D4e-711418120173NAC domain-containing protein 19
3swp_A4e-711418120173NAC domain-containing protein 19
3swp_B4e-711418120173NAC domain-containing protein 19
3swp_C4e-711418120173NAC domain-containing protein 19
3swp_D4e-711418120173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G448500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679140.0BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBankEU9713990.0EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
GenBankKP2979320.0KP297932.1 Zea mays Zma1158 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958721.10.0NAC domain-containing protein 48
SwissprotQ8H4S43e-80NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLK3ZUI60.0K3ZUI6_SETIT; Uncharacterized protein
STRINGSi030267m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.18e-78NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]