PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G411500.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 701aa MW: 76750.1 Da PI: 4.5695 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.6e-14 | 35 | 79 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W+teEd l ++++G+++W+ Ia+ + +t+ qc+ rw++yl Sevir.2G411500.6.p 35 SWSTEEDSVLRAQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 79 6****************************9.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.6 | 2.8e-13 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ + Sevir.2G411500.6.p 85 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 128 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.436 | 28 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-26 | 32 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-12 | 32 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-12 | 35 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 36 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.7E-14 | 36 | 96 | No hit | No description |
SMART | SM00717 | 4.7E-14 | 84 | 132 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.039 | 84 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 87 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.43E-10 | 88 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MATGPDLSSS SGAAAAAVPD AAPGAAAKKD RHIVSWSTEE DSVLRAQIAL HGTDNWTIIA 60 AQFKDKTARQ CRRRWYNYLN SECKKGGWSR EEDMLLCEAQ KLLGNRWTEI AKVVSGRTDN 120 AVKNRFSTLC KRRAKDDEPF QENGTPCSNT NAKRVLTQTG CVTPGAASSS APMKQMSSDL 180 KENIVPNMRL FGQEKGTHQD ARQPLATLSS NNQQNVNTVK SHNLVTTTTK PLLGPEQHCV 240 KQEGNFMNKD DPKVAILLQQ ADLLCSLATK IKTDDTSQSM DEAWQQLQHH LVKKDDNGMS 300 ENSESGIASL LEELDDLIVD PYESKEEDEQ KIREQNGQRQ TDVENEHCTG PSQASMEVTS 360 NMVPDEMMED HTVDNCKEVS NLCTNMLSRS TEACPDAKIP ASENLSEVAE DSRLQRVEST 420 SPGLTDFDDF IIDPYENTEE DEQNIREQNG QIDAHDNQSY GHSQATMELT PGVAPDELME 480 ACPADSCKED SSLCRNVLSG SMEPCPGEEK AASTNLSEVA EESRLQCIES TSPVLANFQT 540 KECGETPAPE KPNEVVEDSR LQCVEFTSPS HTVLRAKAGA ETFASPRIPV VAKDSKLPSM 600 EFTSPAHTVL RTKAGAETFA SPRSTVVAKD SKLPSMEFTS PAHTVATFQP YADYADDMPT 660 PKFTASERNF LLSVIELTSP GSRPETSQQP SCKRALLNSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 36 | 133 | 10 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G411500.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063426 | 1e-129 | AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680418.1 | 0.0 | transcription factor MYB88 isoform X2 | ||||
TrEMBL | A0A368Q8F6 | 0.0 | A0A368Q8F6_SETIT; Uncharacterized protein | ||||
STRING | Si029124m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 2e-84 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G411500.6.p |