PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G394300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 340aa    MW: 36816.2 Da    PI: 9.9228
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G394300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA107.21.3e-33199255158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hA++R+RgsgGrF
  Sevir.2G394300.1.p 199 EEPIYVNAKQYHAILRRRQTRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 255
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.7E-38197258IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.703198258IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-28200255IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-25201223IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860203223IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-25232255IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAALLSAPGV ASCSPWLICL TLAQRLIRLI FFFNPATADV FPFSFRGFIH HISVKDHPVH  60
PMSKSNHGVL SGNDHEMKHL GHKIHDRDSS SGSGQSHQEA SAVSETSLNE HTSIQSDNDE  120
GHGKHNQFTV KPVLSMGKQG SAFSPPKLDY NASFACVPYT ADAYYGGVLT GYPPHAVVHP  180
QQNQTTNAPV VLPVEPAAEE PIYVNAKQYH AILRRRQTRA KLEAQNKLVK GRKPYLHESR  240
HRHAMKRARG SGGRFLNTKQ LQEQNQQHQA SGGSSCSKVI GNTISSQSDP NPTTPSAPAS  300
SDTASASRAN QDRTCFPSVG FRPAMNFSEQ GGGSAKLVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-23199274274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239248RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G394300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958251.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_004958252.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_012698905.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_022679645.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_022679646.10.0nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLK3ZVN20.0K3ZVN2_SETIT; Uncharacterized protein
STRINGSi030663m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.13e-39nuclear factor Y, subunit A5