PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G385300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 188aa    MW: 19353.9 Da    PI: 8.9204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G385300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174062123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++Cp Cgk F +   L  H  +H
  Sevir.2G385300.1.p 40 FRCPLCGKAFASYQALGGHKASH 62
                        89**********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.6E-133964IPR007087Zinc finger, C2H2
SMARTSM003550.0114062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6584067IPR007087Zinc finger, C2H2
SuperFamilySSF576676.42E-84062No hitNo description
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SuperFamilySSF576676.42E-892119No hitNo description
PfamPF139122.3E-896119IPR007087Zinc finger, C2H2
SMARTSM003553.797119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.80697124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDQDEYLSLC LMALAAACQQ AGAAPSSSMA AASTDLPLHF RCPLCGKAFA SYQALGGHKA  60
SHRKPPAAAG VAPLFHQKEV SAEASASGSG CGGTRRHVCT VCRRGFETGQ ALGGHKRFHY  120
LHGPSVSASL PGAAEPSAGG GFDLNLAPLV APEIGFPGVR RRSEDEEVQS PLPLPAKKPR  180
RRPSNSA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G385300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432383e-85AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958186.21e-130zinc finger protein 1
SwissprotQ75KE52e-35ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLK4A1G81e-129K4A1G8_SETIT; Uncharacterized protein
STRINGSi032711m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-19salt tolerance zinc finger
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]