PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G368500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 679aa    MW: 72288.1 Da    PI: 7.2147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G368500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08282304426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C++f+r G C+ Gd+C F+Hg
  Sevir.2G368500.2.p 282 VPCPNFRRPGGCPSGDSCEFSHG 304
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.76E-1471151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.7E-1672152IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.50273148IPR020683Ankyrin repeat-containing domain
PfamPF127969.8E-1073140IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7367397IPR002110Ankyrin repeat
SMARTSM002480.373103IPR002110Ankyrin repeat
CDDcd002041.02E-1375151No hitNo description
PROSITE profilePS5008812.876108143IPR002110Ankyrin repeat
SMARTSM002480.0033108140IPR002110Ankyrin repeat
PRINTSPR014157.7E-5109124IPR002110Ankyrin repeat
PRINTSPR014157.7E-5127141IPR002110Ankyrin repeat
PROSITE profilePS5010313.995278306IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4278305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5279307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6282305IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6282304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4310343IPR000571Zinc finger, CCCH-type
SMARTSM0035621314337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MGDLADLACA GDAARSHLAG AGRRDRLAEL LELAAADDAA AFREKLAGAG GDGDAAELAD  60
GVGLWYGRSK AYEPRTPLMV AATYGSAEVV SLLLGLGCVD VNRRPGVDGA TPLHCAASGG  120
SRNAVAIVKL LLAAGADPVT PDSAGRFPAD VILAPPASPD ALGDLEMLLG RRRGLAVTTS  180
VPSGSSSPPL SSSPDEGNRS PSSRSSSLSP ITVDRAKKEY PVDPTLPDIK SSVYASDEFR  240
MFAFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPSGDSCE  300
FSHGVFESWL HPSQYRTRLC KEGAACARRI CFFAHDEDEL RHVPHNSGAG LLSPRASSSI  360
DMTAAAALGL LPGSPTRHFV PPPLSPSAAN NGGGAAAHWL QGSRLRSSFN ARDAQADDLG  420
ALLEWESQYL GALSLPQSSR SQPRLSTGLS IHPTAMAPSN LEEMYASDVA MSPRFTNDQA  480
HSVYSPAHKS ALLNKFHHQQ KGLLSPVNTN RMFSPRGLDP SIIHSPFGGM SPRSPRTMEP  540
TSPLSARVGA TVTQPQRDMF DHFSSMNKHQ LPSVGSPRNL NASWGNIGTP KSKVDWGVDN  600
EELVRLRHPA QPGAAGEEPD VSWVQSLVNN AELNGKRGEM AGMASRPMSR PDLSSQGDLV  660
DQTMIASWLE QQMHLEPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gmr_A2e-122215115142OR266 DE NOVO PROTEIN
4gmr_B2e-122215115142OR266 DE NOVO PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G368500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543660.0BT054366.1 Zea mays full-length cDNA clone ZM_BFc0002O06 mRNA, complete cds.
GenBankBT0544470.0BT054447.1 Zea mays full-length cDNA clone ZM_BFc0063F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801940.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A2S3H3Q80.0A0A2S3H3Q8_9POAL; Uncharacterized protein
STRINGPavir.J07041.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-145CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]