PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G332900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 813aa    MW: 92479 Da    PI: 6.0226
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G332900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18e-2057143190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         +fY +Y+ ++GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++   +tgCkak+ vk  + +++wev+ leleHnH+l 
  Sevir.2G332900.1.p  57 QFYVTYGCHAGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGMKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 143
                         6****************99988..9999**************99877..7777778899*************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1757144IPR004330FAR1 DNA binding domain
PfamPF105513.6E-20265355IPR018289MULE transposase domain
PfamPF044341.7E-6544576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.359544580IPR007527Zinc finger, SWIM-type
SMARTSM005756.6E-4555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MEEEEYSTES SNEEDLQEDG EKEGNAAEID VFKPVDIDPA CLPKVGMIFD SEEDAFQFYV  60
TYGCHAGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGM KTGCKAKMIV  120
KDAHFQNRWE VIVLELEHNH PLDPSLLKFK RHLKNSPFSL NPPRMSESEG PQSSSAVALS  180
GRGGDTGVTS STQAEFRTKI DRNRKLKLAD GDLEELLNFL NKMQDQNPCF FYSLDMNEQG  240
QLRNVFWADA KSRSSYNYFG DVVAINVTNF SDQYDMQFVS FVGTNHHAQP VLLGCGLLAG  300
RSLGAYVWLF GTWLRCMNAK PPHSIITNYC HDVAIAIKKV FPNARHRFCL SHILNELPEK  360
LEEMESKDEV ISAFTTLAYD YVTMPDFDKE WQDTIQHFRL EGNEWLSKLY EVRMQWAPVY  420
VKDSFWAGMS VTDRSDSVTD YFDGWLTSGT SLKMFVEQYE GAVKDKLEKE SYEDLRSSQM  480
RPPMMTGLPV EDQAAKVYTA EIFQKFLNEI GHSFHCNYSI LDRNDSVVTY VVSEHINQAT  540
KVDYKVVYDN VEDDIWCLCR LFQSKGILCR HALTVLRQEL VLMIPPKYII HRWCKDCKQT  600
CASISQPVSA GNQELGSYDD LYKLGHQYFA EVVEFGSMNS ESKEYALSIM REIRDKVISY  660
EKSLRDQRVD SHVSTANFAY NPVNEDFTDD ALPISLSTKG WDLTQGQSKR SRKKKLATPT  720
VLDTLKKKTK RAYNKRRNAT ANTINTAVTA TDSVTDATNV QANPVNEGWP LTSTGAPETF  780
PYGVETISFD LSQYNNAPSF HWPESSSRSQ LQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G332900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957762.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLK3ZQS50.0K3ZQS5_SETIT; Uncharacterized protein
STRINGSi028955m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-111FAR1-related sequence 6