PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G292500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 396aa    MW: 41429 Da    PI: 4.8516
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G292500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35411322102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+
  Sevir.2G292500.2.p  41 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 122
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Sevir.2G292500.2.p 123 LLCDIHRRKV 132
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3832125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5937130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.59E-3538130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.9E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAEQGGATGE AGGSEPPATA PAPAPPPVAE AAGQRSLPTP FLTKTYQLVD DPAVDDVISW  60
NEDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE FANDCFRRGE  120
KRLLCDIHRR KVAPAAPAAA LATAAAAAAS GAVTVAAAPI PMALPVTLPG SPALSSDEQV  180
LSSNSGSAED HPQAVPSGSG GASASGDTGE ENERLRRENA RLTRELGQMK KLCNNILLLM  240
TKYASSQQLD ASAALSSVVN CSGESSEALP PPPPLPPAIL DLMPSCPSLA TAAAGLVADA  300
DPEQAARLFG VSIGLKRTRE DDDTGEEPAD HGSAGAEVKT EASDPHQHRG SSSKEPSPDQ  360
HPWPIYRPTP VYHSMRCNAP DQGAAGSDQD GSNSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-264113010110Heat shock factor protein 1
5hdn_A4e-264113010110Heat shock factor protein 1
5hdn_B4e-264113010110Heat shock factor protein 1
5hdn_C4e-264113010110Heat shock factor protein 1
5hdn_D4e-264113010110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G292500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986290.0FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957414.10.0heat stress transcription factor B-2c isoform X2
SwissprotQ652B01e-157HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A368Q4220.0A0A368Q422_SETIT; Uncharacterized protein
TrEMBLK3ZU130.0K3ZU13_SETIT; Uncharacterized protein
STRINGSi030094m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-59HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]