PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G279100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 26932.2 Da PI: 10.7494 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.1 | 2e-37 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkd 89 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v d +++PwdLp a+e e yfFs r+ + +g ++r + sgyWkatgk+ Sevir.2G279100.1.p 11 LPPGFRFHPTDEELVVQYLRRKALSRPLPA-AVIPVVhDGARLDPWDLPG---ASEGEGYFFSLRRAPAMgRGGGRRRRAGSGYWKATGKE 97 79****************************.8899998***********3...35668899998876554355555566799********* PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v+ + ++ lvg+k+ L+f+ ++p++++t Wvmheyrl Sevir.2G279100.1.p 98 KPVFLQcggkRQLLVGVKTALAFH-RSEPSSSRTGWVMHEYRL 139 *****987655555**********.5788889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-45 | 8 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.947 | 11 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MERPAQAPRQ LPPGFRFHPT DEELVVQYLR RKALSRPLPA AVIPVVHDGA RLDPWDLPGA 60 SEGEGYFFSL RRAPAMGRGG GRRRRAGSGY WKATGKEKPV FLQCGGKRQL LVGVKTALAF 120 HRSEPSSSRT GWVMHEYRLA VPGGAAEQRK NASHDCVVEP GGEWVVCRVF LKNRPRSRPN 180 RDVDGKNPGN RASTAHRAAP LQHRGDAGRQ QPSSSSCVTG VTDISDQDEV SSNSIRDAPA 240 ASQRED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-31 | 11 | 172 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-31 | 11 | 172 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-31 | 11 | 172 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-31 | 11 | 172 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-31 | 11 | 172 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-31 | 11 | 172 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-31 | 11 | 172 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G279100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017008 | 1e-146 | KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957303.1 | 1e-178 | NAC domain-containing protein 41 | ||||
Swissprot | O22798 | 3e-48 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | K3ZWG0 | 1e-177 | K3ZWG0_SETIT; Uncharacterized protein | ||||
STRING | Si030942m | 1e-178 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 7e-44 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G279100.1.p |
Publications ? help Back to Top | |||
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