PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G270300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 378aa MW: 40469.8 Da PI: 9.1194

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G270300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.4e-56	26	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke Sevir.2G270300.1.p 26 LPPGFRFHPTDEELITYYLRQKIADGSFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKE 115 79***********************999.89***********99999********************************** PP NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + elvg+kktLvfykgrap+gekt+Wvmheyrl Sevir.2G270300.1.p 116 IYTGqlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 156 9766666667***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-64	23	177	IPR003441	NAC domain
PROSITE profile	PS51005	61.151	26	177	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	27	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MDGSAAASAA AGDGGGGGGS KKEESLPPGF RFHPTDEELI TYYLRQKIAD GSFTARAIAE 60 VDLNKCEPWD LPEKAKLGEK EWYFFSLRDR KYPTGVRTNR ATNAGYWKTT GKDKEIYTGQ 120 LPATPELVGM KKTLVFYKGR APRGEKTNWV MHEYRLHSKS APKSNKDEWV VCRVFAKSAG 180 AKKYPSNNAH SRPHHHPYTL DMVPPLLPTL LQHDPFARGH HHHPYMTPAD LAELARFARG 240 TPGLHPHIQP HPGTAAAAYM NPAAAAAVAP PFTLSGGLSL NLGAPPAMPS PPPPPAALHA 300 MSMSMAMSQQ AAPSGAAGNH QVMAGDHQQQ MAPVGLGGCV IAPGGDGGFG ADATGARYQS 360 LDVEQLVERY WPAGYQV*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MDGSAAASAA AGDGGGGGGS KKEESLPPGF RFHPTDEELI TYYLRQKIAD GSFTARAIAE  60
VDLNKCEPWD LPEKAKLGEK EWYFFSLRDR KYPTGVRTNR ATNAGYWKTT GKDKEIYTGQ  120
LPATPELVGM KKTLVFYKGR APRGEKTNWV MHEYRLHSKS APKSNKDEWV VCRVFAKSAG  180
AKKYPSNNAH SRPHHHPYTL DMVPPLLPTL LQHDPFARGH HHHPYMTPAD LAELARFARG  240
TPGLHPHIQP HPGTAAAAYM NPAAAAAVAP PFTLSGGLSL NLGAPPAMPS PPPPPAALHA  300
MSMSMAMSQQ AAPSGAAGNH QVMAGDHQQQ MAPVGLGGCV IAPGGDGGFG ADATGARYQS  360
LDVEQLVERY WPAGYQV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	25	183	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	25	183	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	25	183	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	25	183	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	25	183	19	174	NAC domain-containing protein 19
3swm_B	1e-56	25	183	19	174	NAC domain-containing protein 19
3swm_C	1e-56	25	183	19	174	NAC domain-containing protein 19
3swm_D	1e-56	25	183	19	174	NAC domain-containing protein 19
3swp_A	1e-56	25	183	19	174	NAC domain-containing protein 19
3swp_B	1e-56	25	183	19	174	NAC domain-containing protein 19
3swp_C	1e-56	25	183	19	174	NAC domain-containing protein 19
3swp_D	1e-56	25	183	19	174	NAC domain-containing protein 19
4dul_A	1e-56	25	183	16	171	NAC domain-containing protein 19
4dul_B	1e-56	25	183	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G270300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957248.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-86	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A368Q3E4	0.0	A0A368Q3E4_SETIT; Uncharacterized protein
STRING	Si030187m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9361	38	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	5e-91	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Sevir.2G270300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]