PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G265700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 622aa    MW: 65277.5 Da    PI: 10.4389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G265700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-102979446
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                        W t E++ll++av+++G+ +W+++a +++         g+t+ +c++r++ 
  Sevir.2G265700.1.p 29 WGTLEELLLACAVTRHGTASWDSVAMEVQtrsplatrPGLTPHSCRLRFRH 79
                        9999********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-42482IPR009057Homeodomain-like
SMARTSM007173.2E-42583IPR001005SANT/Myb domain
SuperFamilySSF466893.32E-52684IPR009057Homeodomain-like
PfamPF002499.0E-92978IPR001005SANT/Myb domain
CDDcd001670.001262965No hitNo description
PROSITE profilePS500906.2492981IPR017877Myb-like domain
SuperFamilySSF473707.59E-7251358IPR001487Bromodomain
SMARTSM002970.008256362IPR001487Bromodomain
CDDcd043691.38E-6269353No hitNo description
Gene3DG3DSA:1.20.920.101.8E-5280376IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MADGSDGTDV SPESEATAAA AAEKGGEIWG TLEELLLACA VTRHGTASWD SVAMEVQTRS  60
PLATRPGLTP HSCRLRFRHL HRRFSTAGSC GEEDEVEEDP DASAAEGWVD ELRRLRVAEL  120
RRDVERCDLS IGTLQSKVKR LREERERSVS GEAKPDEASG NDRLSGEEPG RSCRESNSTD  180
LKPPKHPGHQ GGGAKEEEVA KQEASGESAA ASKESSDVRS SASLCRRRRG TGSGKADEEE  240
EAASAPRAPP ARSPPLAALL EAVAAKLGSV LQRLHEHEGE EAAAYRGTIR RHVDLDTVRR  300
RMATSAGSRA ADDDHYPAHE LYRDLLLLCT NAVVFFRRST PEHSAAVEAR ALVTGHASAA  360
LREPKQERAA VPAPAPAPAG TDIVGSLIEK GKPLIVCRKR SSIAKAAAAA RKEESSTKAE  420
ADAAEEEEES EDEKKAAAAV TATKDKAWGL RTKKGRGGAV RNPAGLGPRP TKGADGDAAT  480
TTTGGAKKAD KKGAGGAAAG GPAKKRNAVD FLKRLNQSPS RKRGSPLGNT TRKRSASAAA  540
AAAEQESTTT TRRRGAGRKE GTGRGGSRRG GRGTGTKRGV GRPLKRGPAP ATPPPSKRAK  600
TNTRSEKPSG TGKRGGRRPV G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G265700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354230.10.0uncharacterized protein LOC100277965
TrEMBLK3ZRJ20.0K3ZRJ2_SETIT; Uncharacterized protein
STRINGSi029222m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-14DNA-binding bromodomain-containing protein