PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G264600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 498aa    MW: 55185.1 Da    PI: 7.215
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G264600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-11189232141
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                         e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Sevir.2G264600.1.p 189 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 232
                         6777999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.9E-8187237No hitNo description
SMARTSM003385.6E-8189254IPR004827Basic-leucine zipper domain
PfamPF001703.3E-8190232IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082191233IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.46E-7194235No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
PfamPF141443.0E-28289363IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASGGGSMRE QQQEMNISFG MMSHHGHHHH QPPSSSSSSS MHAAAASFMS GKEASGAYDH  60
LGELDQALFM YLDHGSSHGD ATHQEQRQTL NIFPSQPMHV EPSPKGEISL VLSPAPVGSK  120
QPRSPQDHHH HQQAAMEELA GSRRLQQEHH HLQHQPFAAA GAEPAAPGMI KDVKPLAKKD  180
HRRGASTAER DPKTLRRLAQ NREAARKSRL RKKAYIQQLE SSRIRLAQLE QELHTARAQG  240
VFFPNSGLLA DQGVAGKGVP IGGIDGLSSE AAMFDVEYGR WQEEHYRLMY ELRAALQQHL  300
PEGELQMYVE SCLAHHDEMV GIKEGAIKGD VFHLISGVWR SPAERCFLWL GGFRPSEVIK  360
MLLSHVEPLT EQQIVGVYGL QQSALETEEA LSQGLDALYQ SLSDTVVSDA LSCPSNVANY  420
MGQMAAAMNK LSTLEGFVRQ AENLRQQTLH RLHQILTTRQ MARSLLAVSD YFHRLRTLSS  480
LWVTRPRATQ EQQQGHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G264600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660126.20.0transcription factor TGA2
SwissprotQ52MZ21e-171TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLK3ZSM60.0K3ZSM6_SETIT; Uncharacterized protein
STRINGSi029606m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-148bZIP family protein