PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G259400.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 574aa    MW: 61344 Da    PI: 6.5106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G259400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33386444159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Sevir.2G259400.3.p 386 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 444
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-37371446IPR003657WRKY domain
SuperFamilySSF1182905.62E-29378446IPR003657WRKY domain
PROSITE profilePS5081137.539381446IPR003657WRKY domain
SMARTSM007744.0E-38386445IPR003657WRKY domain
PfamPF031062.2E-25387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAGTGNHGSL MEDWLPPPTP SPRTLMSSFL NEEFGSGPFS NLFSEHGTNK PHDQCEKSRE  60
LVSLSEEVPA QAVKDRFQKG FSLEPSLFGA NQKSNSHGGL AERRAARAGF SVPKIDTSRV  120
GSSAVIRSPV SIPPGLSPTT LLESPVFLYN KMAQPSPTTG TLPFLMATND KSTVPPAAII  180
TEDSTFDNDV FSFQPHLGSK QQSFCTAEKD YGAHFQNQSL SNIHRQESSL QSSFTAVKDN  240
TNATIVKAKA SDSMFGNSHY SAGQQQDDET NQNAQSEGVD IRAAACVPVS THCDASLMES  300
QDAVDVSSTL SNEEDERATH GTASIECEGD EDETESKRRK LDALGTSTIT TAVATPTSTI  360
DMGTAASRAV REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY KCTHPGCSVR  420
KHVERASHDL KSVITTYEGK HNHEVPAARN SGQAGSSSAN APSASQGSSS HRRQEPAQAS  480
FAHFGASAPF GSFVLPPSSQ LGPATGNFRF GMVPPGMAIP MPSLGSLAPT KMVGNSSAMQ  540
GYPGLMMPVE PKAEPAPPVY QQMMSRPPFG HQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38377447878Probable WRKY transcription factor 4
2lex_A8e-38377447878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G259400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957146.10.0probable WRKY transcription factor 2
RefseqXP_022680444.10.0probable WRKY transcription factor 2
TrEMBLK3ZRW20.0K3ZRW2_SETIT; Uncharacterized protein
STRINGSi029342m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.14e-55WRKY DNA-binding protein 2