PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G252800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 274aa MW: 28019.4 Da PI: 9.4911 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.7 | 2.6e-38 | 48 | 106 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Sevir.2G252800.1.p 48 AGDPCPRCESRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 106 5679**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-24 | 49 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.705 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-32 | 51 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MQEPGRRPAP PFAGVDLRRP KGYPAPAARA AEEPASASSA SAQAQPPAGD PCPRCESRDT 60 KFCYYNNYNT SQPRHFCKSC RRYWTKGGSL RNVPVGGGTR KSSSSSSASS SSLAAAPKST 120 KRSKNSKRRR VAPAPDPVPA TEASATTTRV ANNAPVPAPS TVAAAMVVAT GKPTASKPAP 180 PVAAAEKTTA PEPAATVAAM DEKLTAPPAA VGCFTSEPST APGLGLADVG CGGGKELPPD 240 PNHFEWPSGC DLGSYWSTGV FADTDPALFL NLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 130 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G252800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582404 | 2e-77 | KC582404.1 Sorghum bicolor dof7 protein (dof7) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957110.1 | 0.0 | dof zinc finger protein MNB1A | ||||
TrEMBL | K3ZVZ3 | 0.0 | K3ZVZ3_SETIT; Uncharacterized protein | ||||
STRING | Si030774m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-28 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G252800.1.p |