PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G247300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 26023.8 Da PI: 4.5224 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 21 | 74 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k Sevir.2G247300.2.p 21 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 74 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 135.3 | 2.1e-43 | 20 | 112 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+ Sevir.2G247300.2.p 20 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRHDHDALRRDKDALVAEI 110 69***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 ke Sevir.2G247300.2.p 111 KE 112 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.0E-19 | 14 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 19 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-16 | 21 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.72E-18 | 21 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 22 | 83 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.5E-6 | 47 | 56 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-6 | 56 | 72 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.1E-18 | 76 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMEAEGDAEE EMMACGGGGE KKRRLSAEQV RALERSFEVE NKLEPERKAR LARDLGLQPR 60 QVAVWFQNRR ARWKTKQLER DYAALRHSYD ALRHDHDALR RDKDALVAEI KELKAKLGDE 120 EAAASFTSVK AEPAASDGPP AAGVGSSESD SSAVLNDADA LVTEAPVPEV QGTLLPTPAA 180 AAGAGAAGNH GGVFFHGNFL KVEEDETGFL DDDEPCGGFF AVEQPPPMAW WTEPTEHWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 51 | ERKARLA |
2 | 68 | 76 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G247300.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034257 | 0.0 | BT034257.1 Zea mays full-length cDNA clone ZM_BFc0009H14 mRNA, complete cds. | |||
GenBank | BT039062 | 0.0 | BT039062.1 Zea mays full-length cDNA clone ZM_BFb0367N11 mRNA, complete cds. | |||
GenBank | BT055374 | 0.0 | BT055374.1 Zea mays full-length cDNA clone ZM_BFb0091J03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957072.1 | 1e-173 | homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q6K498 | 1e-124 | HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q9XH37 | 1e-124 | HOX4_ORYSI; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | K3ZW40 | 1e-172 | K3ZW40_SETIT; Uncharacterized protein | ||||
STRING | Si030822m | 1e-173 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-54 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G247300.2.p |
Publications ? help Back to Top | |||
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